View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0179_low_2 (Length: 400)
Name: NF0179_low_2
Description: NF0179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0179_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 121 - 270
Target Start/End: Complemental strand, 38630261 - 38630112
Alignment:
| Q |
121 |
atgtcttctccatttttctttctatacaaaatacttgttattctcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgc |
220 |
Q |
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| T |
38630261 |
atgtcttctccatttttctttctataccaaatacttgttattctcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgc |
38630162 |
T |
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| Q |
221 |
tacggcatctattcattgatagtgaaaaccaaaatcaatattcttcacag |
270 |
Q |
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| T |
38630161 |
tacggcatctattcattgatagtgaaaaccaaaatcaatattcttcacag |
38630112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 38695745 - 38695825
Alignment:
| Q |
164 |
tcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaa |
247 |
Q |
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| T |
38695745 |
tcaccaatgcatcgtgtctatagg---atctgccttgcgctagttcacataccctgctacgacatgtatttattgatagtgaaa |
38695825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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