View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0179_low_3 (Length: 339)

Name: NF0179_low_3
Description: NF0179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0179_low_3
NF0179_low_3
[»] chr5 (5 HSPs)
chr5 (123-328)||(5002848-5003053)
chr5 (199-247)||(12036331-12036379)
chr5 (199-256)||(16802060-16802117)
chr5 (203-248)||(39034478-39034523)
chr5 (199-247)||(6102870-6102918)
[»] chr7 (3 HSPs)
chr7 (199-256)||(47537458-47537515)
chr7 (201-255)||(39786477-39786531)
chr7 (199-257)||(8656327-8656385)
[»] chr4 (6 HSPs)
chr4 (199-256)||(55090813-55090870)
chr4 (199-255)||(45921362-45921418)
chr4 (206-256)||(51100056-51100106)
chr4 (199-256)||(32325057-32325114)
chr4 (199-247)||(53142823-53142871)
chr4 (199-247)||(4860159-4860207)
[»] chr2 (3 HSPs)
chr2 (200-256)||(5444516-5444572)
chr2 (199-249)||(1870517-1870567)
chr2 (199-256)||(33635546-33635603)
[»] scaffold0299 (1 HSPs)
scaffold0299 (199-257)||(18039-18097)
[»] chr1 (4 HSPs)
chr1 (199-256)||(27531-27588)
chr1 (200-242)||(9209276-9209318)
chr1 (206-256)||(27908952-27909002)
chr1 (199-256)||(28490672-28490729)
[»] chr6 (1 HSPs)
chr6 (199-256)||(2398041-2398098)
[»] chr8 (2 HSPs)
chr8 (199-255)||(18131225-18131281)
chr8 (199-255)||(40607332-40607388)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 123 - 328
Target Start/End: Complemental strand, 5003053 - 5002848
Alignment:
Q  123 acacatgttggacaacacgagacaagtcggacaccgacaccgagacgtatgaaaggagaaaataaaatataaatagatttgtcttgaaaataagagtttt 222  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5003053 acacatgttggacaacacgagacaagtcagacaccgacatcgagacgtatgaaaggagaaaataaaatataaatagatttgtcttgaaaataaaagtttt 5002954  T
Q  223 aacttttgattaagtaataactacacaacttttttgttttgtggttgcttaaccaattcttcggaaacattgtttaacattctcttaaaatagtatattc 322  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || |||| |||||||||||||||||| |||||||||||||||    
T  5002953 aacttttgattaagtaataactacacaacttttttattttgtggttgattaaccaatgctccggagacattgtttaacattctcctaaaatagtatattc 5002854  T
Q  323 attcat 328  Q
    ||||||    
T  5002853 attcat 5002848  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 12036331 - 12036379
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactaca 247  Q
    ||||||||||||||||  |||||| ||||||||||||||||||| ||||    
T  12036331 atttgtcttgaaaatataagttttgacttttgattaagtaataattaca 12036379  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 16802117 - 16802060
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    ||||||||||||||||  | |||| ||||||||||||||||||| ||||  |||||||    
T  16802117 atttgtcttgaaaatataaattttgacttttgattaagtaataattacattacttttt 16802060  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 39034478 - 39034523
Alignment:
Q  203 gtcttgaaaataagagttttaacttttgattaagtaataactacac 248  Q
    ||||||||||||  |||||| ||||||||||||||||||| |||||    
T  39034478 gtcttgaaaatataagttttgacttttgattaagtaataattacac 39034523  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 6102918 - 6102870
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactaca 247  Q
    ||||||||| ||||||  |||||| ||||||||||||||||||| ||||    
T  6102918 atttgtcttcaaaatataagttttgacttttgattaagtaataattaca 6102870  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 47537515 - 47537458
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    ||||||||||||||||  |||||| | ||||||||||||||||| |||||||||||||    
T  47537515 atttgtcttgaaaatataagttttgatttttgattaagtaataattacacaacttttt 47537458  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 39786477 - 39786531
Alignment:
Q  201 ttgtcttgaaaataagagttttaacttttgattaagtaataactacacaactttt 255  Q
    ||||||||||||||  ||||||||||||||||||| |||||| ||||| ||||||    
T  39786477 ttgtcttgaaaatataagttttaacttttgattaaataataattacactactttt 39786531  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 8656385 - 8656327
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaactttttt 257  Q
    ||||||||| |||| |  |||||||||||||||||||||||||| || || ||||||||    
T  8656385 atttgtcttaaaaaaataagttttaacttttgattaagtaataattataccactttttt 8656327  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 55090870 - 55090813
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    ||||||||||||||||  |||||| |||||||||||||| |||| |||||||||||||    
T  55090870 atttgtcttgaaaatataagttttgacttttgattaagttataattacacaacttttt 55090813  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 45921362 - 45921418
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaactttt 255  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||| ||||||||||||    
T  45921362 atttgtcttgaaaatataagttttgactattgattaagtaataattacacaactttt 45921418  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 51100056 - 51100106
Alignment:
Q  206 ttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||||||    
T  51100056 ttgaaaatataagttttaacttttgattaagtaataattacactacttttt 51100106  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 32325114 - 32325057
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    ||||||||||||||||  | |||| ||||||||||||||||||| ||||| |||||||    
T  32325114 atttgtcttgaaaatataatttttgacttttgattaagtaataattacaccacttttt 32325057  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 53142871 - 53142823
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactaca 247  Q
    ||||||| ||||||||  |||||||||||||||||||||||||| ||||    
T  53142871 atttgtcatgaaaatataagttttaacttttgattaagtaataattaca 53142823  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 4860207 - 4860159
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactaca 247  Q
    |||||| |||||||||  |||||| ||||||||||||||||||| ||||    
T  4860207 atttgttttgaaaatataagttttgacttttgattaagtaataattaca 4860159  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 5444516 - 5444572
Alignment:
Q  200 tttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    |||||||||||||||  |||||| |||||| |||||||||||| |||||||||||||    
T  5444516 tttgtcttgaaaatataagttttgacttttaattaagtaataaatacacaacttttt 5444572  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 1870517 - 1870567
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacaca 249  Q
    ||||||||||||||||  || ||| ||||||||||||||||||| ||||||    
T  1870517 atttgtcttgaaaatataagctttgacttttgattaagtaataattacaca 1870567  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 33635603 - 33635546
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    ||||||||||||||||  | |||| ||||||||||||||||||| ||||  |||||||    
T  33635603 atttgtcttgaaaatataaattttgacttttgattaagtaataattacatcacttttt 33635546  T

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Target: scaffold0299 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 18039 - 18097
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaactttttt 257  Q
    |||| |||| ||||||  |||||| ||||||||||||||||||| ||||||||||||||    
T  18039 atttatcttaaaaatataagttttgacttttgattaagtaataattacacaactttttt 18097  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 27588 - 27531
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    ||||||||| ||||||  |||||| ||||||||||||||||||| ||||| |||||||    
T  27588 atttgtctttaaaatataagttttgacttttgattaagtaataattacactacttttt 27531  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 9209318 - 9209276
Alignment:
Q  200 tttgtcttgaaaataagagttttaacttttgattaagtaataa 242  Q
    ||||| |||||||||||||||||||||| |||| |||||||||    
T  9209318 tttgttttgaaaataagagttttaacttatgatcaagtaataa 9209276  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 27909002 - 27908952
Alignment:
Q  206 ttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    |||||||||  | |||| ||||||||||||||||||| |||||||||||||    
T  27909002 ttgaaaatataaattttgacttttgattaagtaataattacacaacttttt 27908952  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 28490672 - 28490729
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    ||||||||| ||||||  |||||| | ||||| ||||||||||| |||||||||||||    
T  28490672 atttgtcttaaaaatataagttttgatttttgcttaagtaataattacacaacttttt 28490729  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 2398098 - 2398041
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaacttttt 256  Q
    |||| |||||||||||  |||||| ||||||||||||||||||| ||||  |||||||    
T  2398098 atttatcttgaaaatataagttttgacttttgattaagtaataattacatcacttttt 2398041  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 18131281 - 18131225
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaactttt 255  Q
    ||||||||||||||||  |||||| |||  |||||||||||||| ||||| ||||||    
T  18131281 atttgtcttgaaaatataagttttgactactgattaagtaataattacactactttt 18131225  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 40607388 - 40607332
Alignment:
Q  199 atttgtcttgaaaataagagttttaacttttgattaagtaataactacacaactttt 255  Q
    |||| |||| ||||||  |||||| ||||||||||||||||||| ||||| ||||||    
T  40607388 atttatcttaaaaatataagttttgacttttgattaagtaataattacactactttt 40607332  T

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