View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0179_low_8 (Length: 313)
Name: NF0179_low_8
Description: NF0179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0179_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 71 - 229
Target Start/End: Complemental strand, 28602159 - 28602001
Alignment:
| Q |
71 |
aatactatcttccagaggatgaaaatgctaagattgagnnnnnnnatcatattcaattaggcttcaagcattaattatgagttttttccccataattata |
170 |
Q |
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| T |
28602159 |
aatactatcttcccgaggatgaaaatgctaagattgagttttttgatcatattcaattaggcttcaagtattaattatgagttttttccccataattata |
28602060 |
T |
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| Q |
171 |
aatttcttgctttgaatagaggtcacaattaggcttttacgaattgttagtgtatagaa |
229 |
Q |
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| T |
28602059 |
aatttcttgctttgaatagaggtcacaattaagcttttacgaattgttagtgtatagaa |
28602001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 28603498 - 28603462
Alignment:
| Q |
72 |
atactatcttccagaggatgaaaatgctaagattgag |
108 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
28603498 |
atactatcttcccgaggatgaaaatgctaagattgag |
28603462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 28606687 - 28606651
Alignment:
| Q |
72 |
atactatcttccagaggatgaaaatgctaagattgag |
108 |
Q |
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|||||||||||| ||| |||||||||||||||||||| |
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| T |
28606687 |
atactatcttcctgagaatgaaaatgctaagattgag |
28606651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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