View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0179_low_9 (Length: 290)
Name: NF0179_low_9
Description: NF0179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0179_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 3702722 - 3702468
Alignment:
| Q |
7 |
tagataatactattactaatgttgcagatagatatttaatgaatatctggcaaacattcaaaaccacttggggcttgccttgagcaaaaattgataagct |
106 |
Q |
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| T |
3702722 |
tagataatactactactaatgttgctgatagatacttaatgaatatctggcaaacattcaaaaccgcttggggcttgccttgagcaaaaattgataagct |
3702623 |
T |
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| Q |
107 |
gagtaaatgaaattggaatgtttattattatgcccataatgtttgcttttagagccgtacaaatgcaaattgcaaagtcatagtcaactaaaccgtcaag |
206 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702622 |
gagtaaatgaaattggaatgtttactattatacccataatgtttgcttttagagccgtacaaatgcaaattgcaaagtcatagtcaactaaaccgtcaag |
3702523 |
T |
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| Q |
207 |
gaaaccgcaacattgggcatttggaacacccatagaaaagttgaacatcccattt |
261 |
Q |
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| T |
3702522 |
gaaaccgcaacattggccatttggaacacccatagaaaagttgaacatcccattt |
3702468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 3683959 - 3683705
Alignment:
| Q |
7 |
tagataatactattactaatgttgcagatagatatttaatgaatatctggcaaacattcaaaaccacttggggcttgccttgagcaaaaattgataagct |
106 |
Q |
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|||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3683959 |
tagataatactactactaacgttgcagatagatacttaatgaacatctggcaaacattcaaaaccgcttggggcttgccttgagcaaaaattgataagct |
3683860 |
T |
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| Q |
107 |
gagtaaatgaaattggaatgtttattattatgcccataatgtttgcttttagagccgtacaaatgcaaattgcaaagtcatagtcaactaaaccgtcaag |
206 |
Q |
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| T |
3683859 |
gggtaaatgaaattggaatgtttactattatgcccataatgtttgcttttagagccgtacaaatgcaaattgcaaagtcatagtcaactaaaccgtcaag |
3683760 |
T |
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| Q |
207 |
gaaaccgcaacattgggcatttggaacacccatagaaaagttgaacatcccattt |
261 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3683759 |
gaaaccgcaacattggctatttggaacacccatagaaaagttgaacatcccattt |
3683705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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