View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0180-INSERTION-5 (Length: 505)
Name: NF0180-INSERTION-5
Description: NF0180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0180-INSERTION-5 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Complemental strand, 33992774 - 33992291
Alignment:
| Q |
8 |
tagccgacgatccagttactttcgccgagcttaaagtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctat |
107 |
Q |
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| T |
33992774 |
tagccgacgatccagttactttcgccgagcttaaagtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctat |
33992675 |
T |
|
| Q |
108 |
tgttactggtaaaggacctttggagaatcttttggatcacattgataaccctgttgccaataatgcttgggtttatgccaccaagtttgtgcccggttct |
207 |
Q |
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| T |
33992674 |
tgttactggtaaaggacctttggagaatcttttggatcacattgataaccctgttgccaataatgcttgggtttatgccaccaagtttgtgcccggttct |
33992575 |
T |
|
| Q |
208 |
taaacatcaatgttatctatgattgcctttgtgtggatgatgatcagacatggcatttatgtgtaaattatgatcttaattattattggattagtgtatc |
307 |
Q |
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| T |
33992574 |
taaacatcaatgttatctatgattgcctttgtgtggatgatgatcagacatggcatttatgtgtaaattatgatcttaattattattggattagtgtatc |
33992475 |
T |
|
| Q |
308 |
tgtttttggttcttaaggactaatgttcattttaaagctggaagatctcatgttgatatgttttgttcaaactaacaaactaaaaaagaaatcatgttaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
33992474 |
tgtttttggttcttaaggactaatgttcattttaaagctggaagatctcacgttgatatgttttgttcaaa--------ctaaaaaagaattaatgttaa |
33992383 |
T |
|
| Q |
408 |
tgcaatttgtttaaaccaactaacaaggaaagccatataaatatgaagaggnnnnnnnnncttaaagtaccgttgtataaatactatttgtgc |
500 |
Q |
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| T |
33992382 |
tgcaatttgtttaaaccaactaacaagg-aagccatataaatatgaagaggaaaaaaaaacttaaagtaccgttgtataaatactatttgtgc |
33992291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 3572981 - 3573076
Alignment:
| Q |
43 |
gtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaatctt |
138 |
Q |
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||||| ||| ||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||| || || ||||||||| | ||||||||| |
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| T |
3572981 |
gtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatctt |
3573076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 42603120 - 42603171
Alignment:
| Q |
65 |
gattggctatgttttcaatgtttggtttctttgttcaagctattgttactgg |
116 |
Q |
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||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
42603120 |
gattggctatgttctccatgtttggtttctttgttcaagccattgttactgg |
42603171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 38357304 - 38357392
Alignment:
| Q |
46 |
aaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaa |
134 |
Q |
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|||||| |||| || || ||||| || ||||| || ||||| || ||||||||||| |||||||| || || || |||||||||||||| |
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| T |
38357304 |
aaggaactcaagaacggtagattagccatgttctctatgttcggattctttgttcaggctattgtgaccggaaagggacctttggagaa |
38357392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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