View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0180-INSERTION-6 (Length: 681)

Name: NF0180-INSERTION-6
Description: NF0180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0180-INSERTION-6
NF0180-INSERTION-6
[»] chr5 (6 HSPs)
chr5 (25-681)||(12932477-12933128)
chr5 (25-681)||(12946690-12947341)
chr5 (25-127)||(39570865-39570967)
chr5 (25-66)||(6735945-6735986)
chr5 (25-81)||(42091932-42091988)
chr5 (25-81)||(42580466-42580522)
[»] chr4 (12 HSPs)
chr4 (25-128)||(39606241-39606344)
chr4 (25-127)||(27512956-27513058)
chr4 (25-128)||(4608157-4608260)
chr4 (25-128)||(23237461-23237564)
chr4 (25-128)||(18502029-18502132)
chr4 (25-128)||(32595042-32595145)
chr4 (25-128)||(54508513-54508617)
chr4 (27-128)||(34021250-34021352)
chr4 (25-128)||(18493735-18493839)
chr4 (25-128)||(22375840-22375944)
chr4 (25-73)||(20167543-20167591)
chr4 (25-73)||(21733914-21733962)
[»] chr7 (11 HSPs)
chr7 (25-128)||(33036027-33036130)
chr7 (25-126)||(38892096-38892197)
chr7 (25-128)||(23333248-23333351)
chr7 (25-128)||(27571546-27571649)
chr7 (25-128)||(27098832-27098935)
chr7 (25-128)||(27179368-27179471)
chr7 (25-91)||(11468634-11468700)
chr7 (25-86)||(5437132-5437193)
chr7 (95-128)||(2830159-2830192)
chr7 (25-58)||(36558381-36558414)
chr7 (25-73)||(45809973-45810021)
[»] chr3 (4 HSPs)
chr3 (25-128)||(22775204-22775307)
chr3 (25-127)||(37224424-37224526)
chr3 (25-128)||(26769764-26769868)
chr3 (25-128)||(37057558-37057661)
[»] chr6 (2 HSPs)
chr6 (25-128)||(7590439-7590542)
chr6 (25-73)||(13703108-13703156)
[»] chr2 (3 HSPs)
chr2 (25-128)||(2096136-2096239)
chr2 (25-75)||(41732608-41732658)
chr2 (25-91)||(21278646-21278712)
[»] chr1 (12 HSPs)
chr1 (25-127)||(44592621-44592723)
chr1 (25-128)||(43022583-43022686)
chr1 (25-129)||(36156896-36157000)
chr1 (25-128)||(50303877-50303981)
chr1 (25-128)||(27773587-27773690)
chr1 (25-128)||(50099639-50099743)
chr1 (25-128)||(26633029-26633132)
chr1 (25-126)||(43410971-43411073)
chr1 (25-91)||(29681112-29681178)
chr1 (94-128)||(44429736-44429770)
chr1 (25-91)||(48366656-48366722)
chr1 (25-73)||(7493431-7493479)
[»] chr8 (2 HSPs)
chr8 (25-125)||(33538307-33538407)
chr8 (25-73)||(18606052-18606100)


Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 25 - 681
Target Start/End: Complemental strand, 12933128 - 12932477
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    ||||||||||| | |||| |||||||||||||  |||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||  |||||||    
T  12933128 aatatatattttgttaccccaagttcgattttttgtgtaataattttttatgactttagttattttcgggtgaccaccttataaaattattattagcttc 12933029  T
Q  125 gccggcgccgttgcatacaaccacttaccttataatgtaattaatagtaaaaatcaaataatgaatgtcacatttaagaatttcattaaaaaccatgtac 224  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12933028 gccgacgccgctgcatacaaccacttaccttataatgtaattaatagtaaaaatcaaataatgaatgtcacatttaagaatttcattaaaaaccatgtac 12932929  T
Q  225 aaccttcggcacatcgttctcgtgcttaaaatatggaatcaatgcatcaatcacaataaatttgctgattatttgggatttcataaagtaccaaacataa 324  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12932928 aaccttcggcacattgttctcgtgcttaaaatatggaatcaatgcatcaatcacaataaatttgctgattatttgggatttcataaagtaccaaacataa 12932829  T
Q  325 cactctttgttttgttataccttaaacacaagttggtcacaatcacatgctgacgtttgtgtgtgtgtccagtcagagagtcactttctgacaaaccctg 424  Q
    |||||||||||     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12932828 cactctttgtt-----ataccttaaacacaagttggtcacaatcacaagctgacgtttgtgtgtgtgtccagtcagagagtcactttctgacaaaccctg 12932734  T
Q  425 cgcgcgtgtgtgttgcaaaatcgccattcaccaaaatttcctaataagaatctatttattcactgaaataaccaaacctaccaccattctttgtttcacc 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  12932733 cgcgcgtgtgtgttgcaaaatcgccattcaccaaaatttcctaataagaatctatttattcactgaaataaccaaaccaaccacaattctttgtttcacc 12932634  T
Q  525 cttctgctctaacattcattgctcttttctcccattcaataaaccaaggtaacattctttttcccttactttttggactgtcatccatgatcagattcct 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12932633 cttctgctctaacattcattgctcttttctcccattcaataaaccaaggtaacattctttttcccttactttttggactgtcatccatgatcagattcct 12932534  T
Q  625 tacttttaaggacatatcatccatgatcagattcctgattgtactttatcatattat 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12932533 tacttttaaggacatatcatccatgatcagattcctgattgtactttatcatattat 12932477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 25 - 681
Target Start/End: Complemental strand, 12947341 - 12946690
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt-atgactttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    ||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||||||| ||||||| || || ||||||||||||||||||| ||||||    
T  12947341 aatatatattttgctaccccaagttcgattttttgtgtaataatttttttatgactttagttattttcgggtggccacctcataaaattattgttagctt 12947242  T
Q  124 cgccggcgccgttgcatacaaccacttaccttataatgtaattaatagtaaaaatcaaataatgaatgtcacatttaagaatttcattaaaaaccatgta 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12947241 cgccggcgccgctgcatacaaccacttaccttataatgtaattaatagtaaaaatcaaataatgaatgtcacatttaagaatttcattaaaaaccatgta 12947142  T
Q  224 caaccttcggcacatcgttctcgtgcttaaaatatggaatcaatgcatcaatcacaataaatttgctgattatttgggattt-cataaagtaccaaacat 322  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12947141 caaccttcggcacattgttctcgtgcttaaaatatggaatcaatgcatcaatcacaataaatttgctgattatttgggattttcataaagtaccaaacat 12947042  T
Q  323 aacactctttgttttgttataccttaaacacaagttggtcacaatcacatgctgacgtttgtgtgtgtgtccagtcagagagtcactttctgacaaaccc 422  Q
    |||||||||||||     ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  12947041 aacactctttgtt-----ataccttaaacacaagttggtcacaatcacaagctgacgtttgtgtgtgt--ccagtcagagagtcactttctgacaaaccc 12946949  T
Q  423 tgcgcgcgtgtgtgttgcaaaatcgccattcaccaaaatttcctaataagaatctatttattcactgaaataaccaaacctaccaccattctttgtttca 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12946948 tgcgcgcgtgtgtgttgcaaaatcgccattcaccaaaatttcctaataagaatctatttattcactgaaataaccaaaccaaccaccattctttgtttca 12946849  T
Q  523 cccttctgctctaacattcattgctcttttctcccattcaataaaccaaggtaacattctttttcccttactttttggactgtcatccatgatcagattc 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12946848 cccttctgctctaacattcattgctcttttctcccattcaataaaccaaggtaacattctttttcccttactttttggactgtcatccatgatcagattc 12946749  T
Q  623 cttacttttaaggacatatcatccatgatcagattcctgattgtactttatcatattat 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12946748 cttacttttaaggacatatcatccatgatcagattcctgattgtactttatcatattat 12946690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 39570865 - 39570967
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||| ||| ||||| |||| ||||||||||||||||||||||    
T  39570865 aatatatatttggctaccccaagttcgattttaggtgtaataattttttatgacttttgttactttcggatggccacgtcataaaattattgctagcttc 39570964  T
Q  125 gcc 127  Q
    |||    
T  39570965 gcc 39570967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 6735945 - 6735986
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaata 66  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  6735945 aatatatatttggctaccccaagttcgattttaggtgcaata 6735986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 42091988 - 42091932
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgacttt 81  Q
    |||| ||||||||||||  ||||||| |||||||| ||||||||||||| |||||||    
T  42091988 aatacatatttggctactccaagttctattttaggcgtaataattttttgtgacttt 42091932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 42580466 - 42580522
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgacttt 81  Q
    |||||||||||||||| | ||| || ||||||||||| ||||||||||| |||||||    
T  42580466 aatatatatttggctatcccaattttgattttaggtgaaataattttttttgacttt 42580522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 39606344 - 39606241
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| ||| ||||| |||||||||||||||||||||||||||    
T  39606344 aatatatatttggctacctcaagttcgattttaggtgcaataattttttatgactttggttactttcggatggccacctcataaaattattgctagcttc 39606245  T
Q  125 gccg 128  Q
    ||||    
T  39606244 gccg 39606241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 27512956 - 27513058
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  27512956 aatatatatttggctaccccaagttcgattttaggtgtaataattttttatgactttggttactttcgggtggccacctcataaaattattgctagcttc 27513055  T
Q  125 gcc 127  Q
    |||    
T  27513056 gcc 27513058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 4608157 - 4608260
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  4608157 aatatatatttggctacctcaagttcgattttagatgtaatcattttttatgactttggttactttcgggtggccacctcataaaattattgctagcttc 4608256  T
Q  125 gccg 128  Q
    ||||    
T  4608257 gccg 4608260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 23237564 - 23237461
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||  ||| |||||| || |||||||||||||||||||||||||||    
T  23237564 aatatatatttggctgccccaagttcgattttagatgtaataattttttatgactttggttacttttgggtggccacctcataaaattattgctagcttc 23237465  T
Q  125 gccg 128  Q
    ||||    
T  23237464 gccg 23237461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 18502029 - 18502132
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |||  ||| |||||| || |||||||||||||||||||||||||||    
T  18502029 aatatatatttggctaccctaagttcgattttaggtgtaataattttttgtgaatttcgttagttttgggtggccacctcataaaattattgctagcttc 18502128  T
Q  125 gccg 128  Q
    ||||    
T  18502129 gccg 18502132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 32595145 - 32595042
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  ||  ||| ||||| |||||||| ||||||||||||||||||    
T  32595145 aatatatatttggctaccccaagttcgattttaggtgcaataattttttatgactttggtttctttcggatggccacctcaaaaaattattgctagcttc 32595046  T
Q  125 gccg 128  Q
    ||||    
T  32595045 gccg 32595042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 54508617 - 54508513
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt-atgactttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    |||||||||||||||||| || |||||||||||| |||| | ||||||| |||||||| |||| ||| || || ||||||||||||||||||||||||||    
T  54508617 aatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgactttgattactttcgggtggccacctcataaaattattgctagctt 54508518  T
Q  124 cgccg 128  Q
    |||||    
T  54508517 cgccg 54508513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 34021352 - 34021250
Alignment:
Q  27 tatatatttggctacctcaagttcgattttaggtgtaataatttttt-atgactttaattatttttggatgaccacctcataaaattattgctagcttcg 125  Q
    |||||||||||||||| || |||||||||||| |||| | ||||||| ||||||||  ||| |||||| || ||||||||||||||||||||||||||||    
T  34021352 tatatatttggctaccccaggttcgattttagatgtagtcatttttttatgactttggttacttttgggtggccacctcataaaattattgctagcttcg 34021253  T
Q  126 ccg 128  Q
    |||    
T  34021252 ccg 34021250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 18493839 - 18493735
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt-atgactttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    |||||||||||||||||| || |||||||||||| |||| | ||||||| ||||||||  ||| ||| || || ||||||||||||||||||||||||||    
T  18493839 aatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgactttggttactttcgggtggccacctcataaaattattgctagctt 18493740  T
Q  124 cgccg 128  Q
    |||||    
T  18493739 cgccg 18493735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 22375944 - 22375840
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt-atgactttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    |||||||||||||||||| || |||||||||||| |||| | ||||||| ||||||||  ||| ||| || || ||||||||||||||||||||||||||    
T  22375944 aatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgactttggttactttcgggtggccacctcataaaattattgctagctt 22375845  T
Q  124 cgccg 128  Q
    |||||    
T  22375844 cgccg 22375840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 20167543 - 20167591
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt 73  Q
    |||||||||||||||||| |||||| ||||||||||  |||||||||||    
T  20167543 aatatatatttggctaccccaagtttgattttaggtagaataatttttt 20167591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 21733914 - 21733962
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt 73  Q
    |||||||| ||||||||| |||||| ||||||||||| ||||| |||||    
T  21733914 aatatatagttggctaccccaagtttgattttaggtggaataacttttt 21733962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 33036130 - 33036027
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||||||| |||    
T  33036130 aatatatatttggctaccccaagttcgattttaggtgtaataattttttgtgaatttcattagttttggatggccacctcataaaattattgctagtttc 33036031  T
Q  125 gccg 128  Q
    ||||    
T  33036030 gccg 33036027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 38892197 - 38892096
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||| ||| |||  ||| |||||||||||||||||||||||||||||||||||||    
T  38892197 aatatatatttgattaccccaagttcgattttaggtgtaataattttttgtgaatttcgttagttttggatgaccacctcataaaattattgctagcttc 38892098  T
Q  125 gc 126  Q
    ||    
T  38892097 gc 38892096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 23333351 - 23333248
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||  ||| ||| || || |||||||||||||||||||||||||||    
T  23333351 aatatatatttggctactccaagttcgattttaggtgcaataattttttataactttggttactttcgggtggccacctcataaaattattgctagcttc 23333252  T
Q  125 gccg 128  Q
    ||||    
T  23333251 gccg 23333248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 27571649 - 27571546
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||||| |||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  27571649 aatatatatttggctaccctatgttcgattttaggtgtaataattttttgtgactttggttactttagggtggccacctcataaaattattgctagcttc 27571550  T
Q  125 gccg 128  Q
    ||||    
T  27571549 gccg 27571546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 27098935 - 27098832
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||| | ||| ||  ||||||  |||||||||||||| ||||||| |||| ||| || || ||||||||||||||||||| |||||||    
T  27098935 aatatatatttggctatcccaaatttaattttaaatgtaataattttttgtgactttgattactttggggtggccacctcataaaattattgttagcttc 27098836  T
Q  125 gccg 128  Q
    ||||    
T  27098835 gccg 27098832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 27179368 - 27179471
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||| | ||| ||  ||||||  |||||||||||||| ||||||| |||| ||| || || ||||||||||||||||||| |||||||    
T  27179368 aatatatatttggctatcccaaatttaattttaaatgtaataattttttgtgactttgattactttggggtggccacctcataaaattattgttagcttc 27179467  T
Q  125 gccg 128  Q
    ||||    
T  27179468 gccg 27179471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 11468634 - 11468700
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattattttt 91  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| | ||||||| |||| ||||    
T  11468634 aatatatatttggctacctcaagtttgattttagttgaaataattttgtctgactttgattactttt 11468700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 5437193 - 5437132
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaatta 86  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||| ||||    
T  5437193 aatatatatttggctaccccaagtttgattttagttgaaataattttgtatgactttgatta 5437132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 2830159 - 2830192
Alignment:
Q  95 tgaccacctcataaaattattgctagcttcgccg 128  Q
    ||||||||||||| ||||||||||||||||||||    
T  2830159 tgaccacctcatagaattattgctagcttcgccg 2830192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 36558381 - 36558414
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttag 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  36558381 aatatatatttggctacctcaagtttgattttag 36558414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 45810021 - 45809973
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt 73  Q
    |||||||||||||||||| ||||||  |||||| ||| |||||||||||    
T  45810021 aatatatatttggctaccccaagttttattttaagtgaaataatttttt 45809973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 9e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 22775307 - 22775204
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  22775307 aatatatatttggctaccccaagttcgattttaggtgtaataattttttatgactttggttactttcgggtggccacctcataaaattattgctagcttc 22775208  T
Q  125 gccg 128  Q
    ||||    
T  22775207 gccg 22775204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 37224424 - 37224526
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  37224424 aatatatatttggctatcccaagttcgattttaggtgtaataattttttatgacttttgttactttcgggtggccacctcataaaattattgctagcttc 37224523  T
Q  125 gcc 127  Q
    |||    
T  37224524 gcc 37224526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 26769868 - 26769764
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt-atgactttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    |||||||||||||||||| ||||||||||||||| |||| | ||||||| ||||||||  ||| |||||| || ||||||||||||||||||||||||||    
T  26769868 aatatatatttggctaccccaagttcgattttagatgtagtcatttttttatgactttggttacttttgggtggccacctcataaaattattgctagctt 26769769  T
Q  124 cgccg 128  Q
    |||||    
T  26769768 cgccg 26769764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 37057558 - 37057661
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||  ||| ||| || ||  ||||||||||||||||||||||||||    
T  37057558 aatatatatttggctaccccaagttcgattttaggtgcaataactttttataactttggttactttcgggtggtcacctcataaaattattgctagcttc 37057657  T
Q  125 gccg 128  Q
    ||||    
T  37057658 gccg 37057661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 7590542 - 7590439
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  7590542 aatatatatttggctaccccaagttcgattttagatgtaataattttttatgactttggttactttcgggtggccacctcataaaattattgctagcttc 7590443  T
Q  125 gccg 128  Q
    ||||    
T  7590442 gccg 7590439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 13703108 - 13703156
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt 73  Q
    ||||||||||| |||||||||||||  ||||||| || |||||||||||    
T  13703108 aatatatatttagctacctcaagtttaattttagatgaaataatttttt 13703156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 2096136 - 2096239
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  2096136 aatatatatttggctaccccaagttcgattttaggtgtcataattttttatgactttggttactttcgggtggccacctcataaaattattgctagcttc 2096235  T
Q  125 gccg 128  Q
    ||||    
T  2096236 gccg 2096239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 41732658 - 41732608
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttat 75  Q
    |||||||||||||||||| |||||| |||||||| || |||||||||||||    
T  41732658 aatatatatttggctaccccaagttagattttagttgaaataattttttat 41732608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 21278646 - 21278712
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattattttt 91  Q
    ||||| |||||| ||||| |||||| |||||||| || ||||||||||| ||||||| |||| ||||    
T  21278646 aatatttatttgactaccccaagtttgattttagttgaaataattttttctgactttgattaatttt 21278712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 44592621 - 44592723
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  44592621 aatatatatttggctaccccaagtttgattttaggtgtaataattttttatgacttttgttactttcgggtggccacctcataaaattattgctagcttc 44592720  T
Q  125 gcc 127  Q
    |||    
T  44592721 gcc 44592723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 43022583 - 43022686
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||||| ||| |||| ||| ||||| |||||||||||||||||||| ||||||    
T  43022583 aatatatatttggctacccaaagttcgattttagatgtaataattttttatgattttgattactttcggatggccacctcataaaattattgcaagcttc 43022682  T
Q  125 gccg 128  Q
    ||||    
T  43022683 gccg 43022686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 36157000 - 36156896
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||  ||| ||| || || |||||||||||||||||||||||||||    
T  36157000 aatatatatttggctaccccaagttcaattttaggtgtaataatttcttatgactttggttactttcgggtggccacctcataaaattattgctagcttc 36156901  T
Q  125 gccgg 129  Q
     ||||    
T  36156900 accgg 36156896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 50303981 - 50303877
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt-atgactttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    |||||||||||||||| |||| |||||||||||| |||| | ||||||| ||||||||  ||| ||| ||||| ||||||||||||||||||||||||||    
T  50303981 aatatatatttggctatctcaggttcgattttagatgtagtcatttttttatgactttggttactttcggatggccacctcataaaattattgctagctt 50303882  T
Q  124 cgccg 128  Q
    |||||    
T  50303881 cgccg 50303877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 27773587 - 27773690
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||   | | ||| || || | |||||||||||||||||||||||||    
T  27773587 aatatatatttgcctaccccaagttcgattttaggtgtaataattttttgtgacttcggtaactttcgggtggctacctcataaaattattgctagcttc 27773686  T
Q  125 gccg 128  Q
    ||||    
T  27773687 gccg 27773690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 50099639 - 50099743
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttt-ttatgactttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    |||||||||||| ||||| || |||||||||||| |||| | ||||| ||||||||||  ||| ||| || || ||||||||||||||||||||||||||    
T  50099639 aatatatatttgactaccccaggttcgattttagatgtagtcatttttttatgactttggttactttcgggtggccacctcataaaattattgctagctt 50099738  T
Q  124 cgccg 128  Q
    |||||    
T  50099739 cgccg 50099743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 26633029 - 26633132
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgac-tttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    ||||||||||||| |||||||||||||||||||||| ||||  |||| | |||| ||| |||| ||| || |||||| ||||||||||| ||||||||||    
T  26633029 aatatatatttggttacctcaagttcgattttaggtataat-tttttgtttgacatttgattaatttcgggtgaccatctcataaaattgttgctagctt 26633127  T
Q  124 cgccg 128  Q
    |||||    
T  26633128 cgccg 26633132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 43410971 - 43411073
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataa-ttttttatgactttaattatttttggatgaccacctcataaaattattgctagctt 123  Q
    ||||||||||||| ||||  ||||| |||||||| |||||||| ||||||||||||||  ||| ||| || || | |||||||||||||||||||||| |    
T  43410971 aatatatatttggttaccctaagtttgattttagatgtaataatttttttatgactttggttactttcgggtggctacctcataaaattattgctagcct 43411070  T
Q  124 cgc 126  Q
    |||    
T  43411071 cgc 43411073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 29681112 - 29681178
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattattttt 91  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| |||| |||| |||| ||||    
T  29681112 aatatatatttggctaccccaagtttgattttagttgaaataattttgtatgtctttgattactttt 29681178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 44429770 - 44429736
Alignment:
Q  94 atgaccacctcataaaattattgctagcttcgccg 128  Q
    |||||||||||||| ||||||||||||||||||||    
T  44429770 atgaccacctcatagaattattgctagcttcgccg 44429736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 48366722 - 48366656
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattattttt 91  Q
    |||||||||||||||| |  ||||| |||||||| || ||||||||| ||||||||| |||| ||||    
T  48366722 aatatatatttggctatcctaagtttgattttagttgaaataattttgtatgactttgattactttt 48366656  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 7493431 - 7493479
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt 73  Q
    |||||||||||||||||| ||||||  |||||| ||| |||||||||||    
T  7493431 aatatatatttggctaccccaagttttattttaagtgaaataatttttt 7493479  T

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Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 33538407 - 33538307
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataattttttatgactttaattatttttggatgaccacctcataaaattattgctagcttc 124  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||  ||| ||| || ||||||||||||||||||||||||||||||    
T  33538407 aatatatatttggttacctcgagttcgattttaggtgtcataattttttatgactttggttactttcgggtgaccacctcataaaattattgctagcttc 33538308  T
Q  125 g 125  Q
    |    
T  33538307 g 33538307  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 18606052 - 18606100
Alignment:
Q  25 aatatatatttggctacctcaagttcgattttaggtgtaataatttttt 73  Q
    |||||||||||||||||| ||||||  |||||| ||| |||||||||||    
T  18606052 aatatatatttggctaccccaagttttattttaagtgaaataatttttt 18606100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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