View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0180_low_1 (Length: 359)

Name: NF0180_low_1
Description: NF0180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0180_low_1
NF0180_low_1
[»] chr1 (3 HSPs)
chr1 (80-270)||(17032648-17032838)
chr1 (1-71)||(17032864-17032934)
chr1 (6-66)||(24685096-24685155)
[»] chr5 (1 HSPs)
chr5 (196-270)||(3713928-3714002)
[»] chr8 (1 HSPs)
chr8 (1-66)||(34866639-34866703)
[»] chr7 (1 HSPs)
chr7 (1-66)||(38305675-38305739)
[»] chr6 (1 HSPs)
chr6 (1-66)||(16510870-16510934)
[»] chr2 (1 HSPs)
chr2 (1-65)||(31902966-31903029)
[»] chr3 (1 HSPs)
chr3 (1-51)||(1653498-1653547)
[»] chr4 (2 HSPs)
chr4 (5-46)||(4305073-4305113)
chr4 (5-42)||(7702937-7702973)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 80 - 270
Target Start/End: Complemental strand, 17032838 - 17032648
Alignment:
Q  80 ggaggagacttccgtcgtcggagtaaacaaaaaccaaatccatgaacctgcaaaaatggctgaatcgacgccgatctcagcaacaacacaaccaaaacca 179  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  17032838 ggaggagacttccgtcgtcggagtaaacaaaaaccaagtccatgaacctgcaaaactgactgaatcgacgccaatctcagcaacaacacaaccaaaacca 17032739  T
Q  180 gttccgaacgcaatagagacaggtggttgttcctcatatcccgttttcttacccttacattacataaatcaagataggtggagaacattta 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17032738 gttccgaacgcaatagagacaggtggttgttcctcatatcccgttttcttgcccttacattacataaatcaagataggtggagaacattta 17032648  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17032934 - 17032864
Alignment:
Q  1 gaggaagacgaaatccaacaacaaaaacacaggcagcgacgccggtgtgaatcagaatcacaaccctgatc 71  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||    
T  17032934 gaggaagacgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatc 17032864  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 24685096 - 24685155
Alignment:
Q  6 agacgaaatccaacaacaaaaacacaggcagcgacgccggtgtgaatcagaatcacaaccc 66  Q
    |||| |||| ||||||||||| ||| ||||||||||||||| |||| ||||| ||||||||    
T  24685096 agacaaaattcaacaacaaaa-cacgggcagcgacgccggtttgaagcagaaccacaaccc 24685155  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 3713928 - 3714002
Alignment:
Q  196 agacaggtggttgttcctcatatcccgttttcttacccttacattacataaatcaagataggtggagaacattta 270  Q
    ||||| ||||||||| |||||||| | ||||||| |||||| ||||||||| | ||||||||| |||||||||||    
T  3713928 agacaagtggttgtttctcatatctcattttcttgcccttagattacataatttaagataggtagagaacattta 3714002  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34866639 - 34866703
Alignment:
Q  1 gaggaagacgaaatccaacaacaaaaacacaggcagcgacgccggtgtgaatcagaatcacaaccc 66  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| |||| | ||| ||||||||    
T  34866639 gaggaagacgaaatccaacaac-aaaacacgggcagcgacgccggtttgaagcggaaccacaaccc 34866703  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38305739 - 38305675
Alignment:
Q  1 gaggaagacgaaatccaacaacaaaaacacaggcagcgacgccggtgtgaatcagaatcacaaccc 66  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| |||| | ||| ||||||||    
T  38305739 gaggaagacgaaatccaacaac-aaaacacaggcagcaacgccggtttgaagcggaaccacaaccc 38305675  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16510870 - 16510934
Alignment:
Q  1 gaggaagacgaaatccaacaacaaaaacacaggcagcgacgccggtgtgaatcagaatcacaaccc 66  Q
    ||||||||||| |||||||||| ||||||| |||||||| |||||| |||| ||||| ||||||||    
T  16510870 gaggaagacgacatccaacaac-aaaacacgggcagcgatgccggtttgaagcagaaccacaaccc 16510934  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31902966 - 31903029
Alignment:
Q  1 gaggaagacgaaatccaacaacaaaaacacaggcagcgacgccggtgtgaatcagaatcacaacc 65  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||| |||| | ||| |||||||    
T  31902966 gaggaagacgaaacccaacaac-aaaacacgggcagcgacgccggtttgaagcggaaacacaacc 31903029  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1653498 - 1653547
Alignment:
Q  1 gaggaagacgaaatccaacaacaaaaacacaggcagcgacgccggtgtgaa 51  Q
    |||||||||||||||||||||| ||||||| |||| |||||||||| ||||    
T  1653498 gaggaagacgaaatccaacaac-aaaacacgggcatcgacgccggtttgaa 1653547  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 4305113 - 4305073
Alignment:
Q  5 aagacgaaatccaacaacaaaaacacaggcagcgacgccggt 46  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  4305113 aagacgaaatccaacaac-aaaacacgggcagcgacgccggt 4305073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 7702973 - 7702937
Alignment:
Q  5 aagacgaaatccaacaacaaaaacacaggcagcgacgc 42  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7702973 aagacgaaatccaacaac-aaaacacaggcagcgacgc 7702937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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