View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0180_low_16 (Length: 247)
Name: NF0180_low_16
Description: NF0180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0180_low_16 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 669567 - 669336
Alignment:
| Q |
17 |
catcatcacttaattttttcccctcttcttcttgctcatatcttcatcatctttcatcatgttcaaaaggttcaatcttttccagaannnnnnnnnn-aa |
115 |
Q |
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| T |
669567 |
catcatcacttaattttttcccctcttcttcttgctcatatcttcatcatctttcatcatgttcaaaaggttcaatcttttccagatttttttttttgaa |
669468 |
T |
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| Q |
116 |
actcaattttcaatcaatcacaacaacaacttcttcataattcaactttatcaaaaaattccataaatttaattgaataattgctatgattccaatttta |
215 |
Q |
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| T |
669467 |
actcaattttcaatcaaccacaacaacaacttcttcataattcaactttatcaaaaaattctataaatttaattgaataattgctatgatttcaatttta |
669368 |
T |
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| Q |
216 |
ataaatctctaatttacttctttgattccatt |
247 |
Q |
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| T |
669367 |
ataaatctctaatttacttctttgattccatt |
669336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 52627927 - 52628050
Alignment:
| Q |
124 |
ttcaatcaatcacaacaacaacttcttcataattcaactttatcaaaaaattccataaatttaattgaataattgctatgattccaattttaataaatct |
223 |
Q |
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| T |
52627927 |
ttcaatcaaccacaaaagcaacttcttcatcattcatctttctaaaaaaattccataaattaaattgaataatttctatgatttcaattttaataaatct |
52628026 |
T |
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| Q |
224 |
ctaatttacttctttgattccatt |
247 |
Q |
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| T |
52628027 |
ctaatttgcttcttccattccatt |
52628050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 9170770 - 9170704
Alignment:
| Q |
37 |
ccctcttcttcttgctcatatcttcatcatctttcatcatgttcaaaaggttcaatcttttccagaa |
103 |
Q |
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| T |
9170770 |
ccctcttcttcttcctcatatcttcatcatctttcatcatgttcaaaaggttcaaccttttccagaa |
9170704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 27965624 - 27965530
Alignment:
| Q |
143 |
aacttcttcataattcaactttatcaaaaaattccataaatttaattgaataattgctatgattccaattttaataaatctctaatttacttctt |
237 |
Q |
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| T |
27965624 |
aacttcttcatcattcatctttctaaaaaacttccataaattaaattgaataatttctatgatttcaattttaataaatatctaatttgcttctt |
27965530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 45395905 - 45395842
Alignment:
| Q |
37 |
ccctcttcttcttgctcatatcttcatcatctttcatcatgttcaaaaggttcaatcttttcca |
100 |
Q |
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| T |
45395905 |
ccctcttcttcttcctcatatcttcatcatctttcatcatgttcaaaatgttcaaccttatcca |
45395842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 3823273 - 3823325
Alignment:
| Q |
137 |
aacaacaacttcttcataattcaactttatcaaaaaattccataaatttaatt |
189 |
Q |
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| T |
3823273 |
aacaacaacttcttcataattcaactttctccaaatattccataaattaaatt |
3823325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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