View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0181-16-Insertion-3 (Length: 724)
Name: NF0181-16-Insertion-3
Description: NF0181-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0181-16-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 8 - 724
Target Start/End: Original strand, 39559479 - 39560196
Alignment:
| Q |
8 |
ttttactcattggttctaggaggaaatgcatgcaaaagaagagattgttttctatataccgtcaaactttttgcacatacatccgatcaaaatatgttat |
107 |
Q |
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| T |
39559479 |
ttttactcattggttctaggaggaaatgcatgcaaaagaagagattgttttctatataccgtaaaactttttgcacatacatccgatcaaaatatgttat |
39559578 |
T |
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| Q |
108 |
aaagagatattgatagctatattttaggaacgaatttaaacaagtgacattattgagttttgatttgataaatgcatgtgtaaaaaagttttacactatt |
207 |
Q |
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| T |
39559579 |
aaagagatattgatagctatattttaggaacgaacttaaacaagtgacattattgagttttgatttgataaatgcacgtgtaaaaaagttttacactatt |
39559678 |
T |
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| Q |
208 |
gatatatacaaattaaatccgttgaagaaataaaaaatttgagtgagggagtatgtaaatgttgggatatccattagagttcttaaagtggtttgtcgaa |
307 |
Q |
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| T |
39559679 |
gatatatacaaattaaatccgttgaagaaataaaaaaattgagtgagggagtatgtaaatgttgggatatccattagagttcttaaagtggtttgtcgaa |
39559778 |
T |
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| Q |
308 |
gcaaaaaacgatatannnnnnnn-aaatgtaggattttcctccggccggttaattttttcgccatctctcttatttcattcttgacttgaactcaagaag |
406 |
Q |
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| T |
39559779 |
gcaaaaagcaagatatttttttttaaatgtaggattttcctctggccggttagttttttcgccatctctcttatttcattcttgacttgaactcaagaag |
39559878 |
T |
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| Q |
407 |
ataatttcttccccacgcacatgcttttctaaaaacacacgatctctctggattacataattcaaatgtgtaaaaaacgtttgttttcttgcaagcttga |
506 |
Q |
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| T |
39559879 |
ataatttcttccccacgcacacgcttttctaaaaacacacgatctctctggattacataattcaaatgtgtaaaaaaagtttgttttcttgcaagcttga |
39559978 |
T |
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| Q |
507 |
aaagtgtaatccaaacaaatcgcgtgttttataaaatacgttggggagaagaaatcttcaatatcttattacatgtttagagtattatgcacattagctc |
606 |
Q |
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| T |
39559979 |
aaagtgtaatccaaacaaatcgcgtgttttataaaatacgttggggagaagaaatcttcaatatcttattacatgtttagagtattatgcacattagctc |
39560078 |
T |
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| Q |
607 |
aatttatgttggagagtgaggagttaatggagtgggtatattgaagtgcctaactgacaactaatgtcgccatgatcatacctccttttgcaggataatt |
706 |
Q |
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| T |
39560079 |
aatttatgttggagagtgaggagttaatggagtgggtatattgaaatgcctaacaaacaactaatgtcgccatgatcatatctccttttgcaggataatt |
39560178 |
T |
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| Q |
707 |
aatgtaacatgtataatc |
724 |
Q |
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| T |
39560179 |
aatgtaacatgtataatc |
39560196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 3214408 - 3214446
Alignment:
| Q |
188 |
taaaaaagttttacactattgatatatacaaattaaatc |
226 |
Q |
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| T |
3214408 |
taaaaaagttttacactgttgatatatacaaattaaatc |
3214446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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