View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0181-16-Insertion-4 (Length: 738)
Name: NF0181-16-Insertion-4
Description: NF0181-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0181-16-Insertion-4 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 4e-77; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 504 - 738
Target Start/End: Complemental strand, 34241494 - 34241261
Alignment:
| Q |
504 |
cggaaagaaatcatcccacgattgtctcgaactaacatgactggttaattatcaatatgttgtcgtgtttttcgttggtaaaaaatgaaagtccttttgt |
603 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | |||| |||||||||||||||| ||||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
34241494 |
cggaaagaaatcatcctgagattgtttcgaactcatatgattggttaattatcaatacgttgtcgtgttttctgctggtaaaaaatgaaagtc-ttttgt |
34241396 |
T |
|
| Q |
604 |
ctttaacgcatattaactcacttcaaaatctaatttgttgcgccgaagagtgttgcaatctaatgacatccattgcattagcgaatatggcagtaccgag |
703 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
34241395 |
ctttaacgcatattaactcacttcaaaatttaatttgttgcgccgaagagtgttgcaacctaatgacatccattgcactggcgaatatggcagtatcgag |
34241296 |
T |
|
| Q |
704 |
acgtgggatcatctttttcttgaatgtgacgtctt |
738 |
Q |
| |
|
||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
34241295 |
acggtggatcatatttttcttgaatgcgacgtctt |
34241261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 360 - 449
Target Start/End: Complemental strand, 34241635 - 34241547
Alignment:
| Q |
360 |
ggtaaggtgtgagtgattatgattatctaatctaatataaatcatgctcaaaataagaaagaactttgatagacttggtgatttctgcac |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34241635 |
ggtaaggtgtgagtgattatgattatctaatctaatataaaccatgctcaaaataag-aagaactttgatagacttggtgatttctgcac |
34241547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 34241990 - 34241890
Alignment:
| Q |
8 |
ttaagtagtaactgtgttcacagtttcattcctatgatttttgcatgnnnnnnnnnnnnnttgatcaaagttaagactgtaaatagtggaagctcatcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241990 |
ttaagtagtaactgtgttcacagtttcattcctatgatttttgcatgaaaaataaaaaaattgatcaaagttaagactgtaaatagtggaagctcatcaa |
34241891 |
T |
|
| Q |
108 |
t |
108 |
Q |
| |
|
| |
|
|
| T |
34241890 |
t |
34241890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 34241751 - 34241699
Alignment:
| Q |
245 |
aattgtatatgtcataaatatacttgtgacagctaatatccaaccatgatcga |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241751 |
aattgtatatgtcataaatatacttgtgacagctaatatccaaccatgatcga |
34241699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 34241835 - 34241797
Alignment:
| Q |
160 |
ttaatgtgaaaatgcgattttataaagctaaaatgaatg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241835 |
ttaatgtgaaaatgcgattttataaagctaaaatgaatg |
34241797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 527 times since January 2019
Visitors: 2229