View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0181-16-Insertion-9 (Length: 233)

Name: NF0181-16-Insertion-9
Description: NF0181-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0181-16-Insertion-9
NF0181-16-Insertion-9
[»] chr5 (14 HSPs)
chr5 (7-230)||(37388301-37388538)
chr5 (46-187)||(37370241-37370379)
chr5 (24-90)||(37395711-37395777)
chr5 (24-90)||(37535377-37535443)
chr5 (24-90)||(37720326-37720392)
chr5 (24-90)||(37826136-37826202)
chr5 (24-90)||(37596632-37596698)
chr5 (24-90)||(37642239-37642305)
chr5 (140-187)||(37642329-37642376)
chr5 (140-187)||(37644582-37644629)
chr5 (140-187)||(37535467-37535514)
chr5 (140-187)||(37596722-37596769)
chr5 (145-187)||(37395640-37395682)
chr5 (74-140)||(37441859-37441922)
[»] chr3 (3 HSPs)
chr3 (22-99)||(14557684-14557761)
chr3 (113-187)||(14557418-14557492)
chr3 (129-187)||(14557777-14557835)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 37388538 - 37388301
Alignment:
Q  7 agtagctaagtcatattttcttcaaccgtatagagcacaccagtggaaatatattttgtggttgcaattttagtgatacgataactgataaaagaaaaat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37388538 agtagctaagtcatattttcttcaaccgtatagagcacaccagtggaaatatgttttgtggttgcaattttagtgatacgataactgataaaagaaaaat 37388439  T
Q  107 taatttattagc--------------atccatggaaatgtttggtgtatattacaagacttggctttagccaaacgagccaagtccatgaagaaagatta 192  Q
    ||||||||||||              |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  37388438 taatttattagcacgccacaaaattaatccatggaaatgtttggtgtatattacaagacttgactttagccaaacaagccaagtccatgaagaaagatta 37388339  T
Q  193 ttgtactagcggtgagtaccatatctgatattagggtt 230  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  37388338 ttgtactagcggtgagtaccatatctgatatcagggtt 37388301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 37370379 - 37370241
Alignment:
Q  46 ccagtggaaatatattttgtggttgcaattttagtgatacgataactgataaaagaaaaattaatttattagcatccatggaaatgtttggtgtatatta 145  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||   | ||||||| |||||||||||| ||||||||||||||||||||    
T  37370379 ccagtggaaatattttttgtggttgcaattttagtgatgcgataattgataaaa---acattaattcattagcatccatagaaatgtttggtgtatatta 37370283  T
Q  146 caagacttggctttagccaaacgagccaagtccatgaagaaa 187  Q
    ||||||||| || |||||||| |||||| |||||||||||||    
T  37370282 caagacttgactatagccaaatgagccatgtccatgaagaaa 37370241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 37395777 - 37395711
Alignment:
Q  24 ttcttcaaccgtatagagcacaccagtggaaatatattttgtggttgcaattttagtgatacgataa 90  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  37395777 ttcttcaaccgtatggagcactccagtggaaatattttttgtggttgcaattttagtgatacgataa 37395711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 37535377 - 37535443
Alignment:
Q  24 ttcttcaaccgtatagagcacaccagtggaaatatattttgtggttgcaattttagtgatacgataa 90  Q
    |||||||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  37535377 ttcttcaaccgtatggagcactccactggaaatattttttgtggttgcaattttagtgatacgataa 37535443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 37720326 - 37720392
Alignment:
Q  24 ttcttcaaccgtatagagcacaccagtggaaatatattttgtggttgcaattttagtgatacgataa 90  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  37720326 ttcttcaaccgtatggagcactccagtggaaatattttttgtggttgcaattttaatgatacgataa 37720392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 37826136 - 37826202
Alignment:
Q  24 ttcttcaaccgtatagagcacaccagtggaaatatattttgtggttgcaattttagtgatacgataa 90  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  37826136 ttcttcaaccgtatggagcactccagtggaaatattttttgtggttgcaattttaatgatacgataa 37826202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 37596632 - 37596698
Alignment:
Q  24 ttcttcaaccgtatagagcacaccagtggaaatatattttgtggttgcaattttagtgatacgataa 90  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||| |||||||||||    
T  37596632 ttcttcaaccgtatggagcactccagtggaaatattttttgtggttgaaattttaatgatacgataa 37596698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 37642239 - 37642305
Alignment:
Q  24 ttcttcaaccgtatagagcacaccagtggaaatatattttgtggttgcaattttagtgatacgataa 90  Q
    |||||||||||||| |||||| ||||||||| | | ||||||||||||||||||| |||||||||||    
T  37642239 ttcttcaaccgtatggagcactccagtggaatttttttttgtggttgcaattttaatgatacgataa 37642305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 37642329 - 37642376
Alignment:
Q  140 atattacaagacttggctttagccaaacgagccaagtccatgaagaaa 187  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  37642329 atattacaagacttggctttagccaaatgagacaattccatgaagaaa 37642376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 37644582 - 37644629
Alignment:
Q  140 atattacaagacttggctttagccaaacgagccaagtccatgaagaaa 187  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  37644582 atattacaagacttggctttagccaaatgagacaattccatgaagaaa 37644629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 37535467 - 37535514
Alignment:
Q  140 atattacaagacttggctttagccaaacgagccaagtccatgaagaaa 187  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  37535467 atattacaagacttgactttagccaaatgagacaattccatgaagaaa 37535514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 37596722 - 37596769
Alignment:
Q  140 atattacaagacttggctttagccaaacgagccaagtccatgaagaaa 187  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  37596722 atattacaagacttgactttagccaaatgagacaattccatgaagaaa 37596769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 37395682 - 37395640
Alignment:
Q  145 acaagacttggctttagccaaacgagccaagtccatgaagaaa 187  Q
    |||||||||| |||||||| || ||||||||||||||||||||    
T  37395682 acaagacttgactttagccgaatgagccaagtccatgaagaaa 37395640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 37441859 - 37441922
Alignment:
Q  74 ttttagtgatacgataactgataaaagaaaaattaatttattagcatccatggaaatgtttggtgta 140  Q
    ||||||||||| ||||| ||||||||   | |||||||||||||||||||| || || |||||||||    
T  37441859 ttttagtgatatgataattgataaaa---acattaatttattagcatccatagacatatttggtgta 37441922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 14557684 - 14557761
Alignment:
Q  22 ttttcttcaaccgtatagagcacaccagtggaaatatattttgtggttgcaattttagtgatacgataactgataaaa 99  Q
    |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  14557684 ttttcttcgaccgtatggagcactccagtggaaatattttttgtggttgcaattttagtgatacgataattgataaaa 14557761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 14557418 - 14557492
Alignment:
Q  113 attagcatccatggaaatgtttggtgtatattacaagacttggctttagccaaacgagccaagtccatgaagaaa 187  Q
    |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  14557418 attagcatccatagaaatatttggtgtatattacaagacttgactttagccaaatgagtcaagtccatgaagaaa 14557492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 14557777 - 14557835
Alignment:
Q  129 atgtttggtgtatattacaagacttggctttagccaaacgagccaagtccatgaagaaa 187  Q
    |||||||||||||||||||||| ||| ||| | ||||| ||||||||||||||| ||||    
T  14557777 atgtttggtgtatattacaagatttgacttcaaccaaatgagccaagtccatgatgaaa 14557835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 590 times since January 2019
Visitors: 2233