View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0181-INSERTION-1 (Length: 728)
Name: NF0181-INSERTION-1
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0181-INSERTION-1 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 3e-65; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 504 - 728
Target Start/End: Complemental strand, 34241494 - 34241270
Alignment:
| Q |
504 |
cggaaagaaatcatcccacgattgtctcgaactaacatgactggttaattatcaatatgttgtcgtgtttttcgttggtaaaaaatgaaagtccttttgt |
603 |
Q |
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| T |
34241494 |
cggaaagaaatcatcctgagattgtttcgaactcatatgattggttaattatcaatacgttgtcgtgttttctgctggtaaaaaatgaaagt-cttttgt |
34241396 |
T |
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| Q |
604 |
ctttaacgcatattaactcacttc-aaatctaatttg-tgcgccgaagagtgttgcaatctaatgacatccattgcattagcgaatatgggcagtaccga |
701 |
Q |
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| T |
34241395 |
ctttaacgcatattaactcacttcaaaatttaatttgttgcgccgaagagtgttgcaacctaatgacatccattgcactggcgaatat-ggcagtatcga |
34241297 |
T |
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| Q |
702 |
gacggtggatcatctttttcttgaatg |
728 |
Q |
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| T |
34241296 |
gacggtggatcatatttttcttgaatg |
34241270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 360 - 449
Target Start/End: Complemental strand, 34241635 - 34241547
Alignment:
| Q |
360 |
ggtaaggtgtgagtgattatgattatctaatctaatataaatcatgctcaaaataagaaagaactttgatagacttggtgatttctgcac |
449 |
Q |
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| T |
34241635 |
ggtaaggtgtgagtgattatgattatctaatctaatataaaccatgctcaaaataag-aagaactttgatagacttggtgatttctgcac |
34241547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 34241990 - 34241890
Alignment:
| Q |
8 |
ttaagtagtaactgtgttcacagtttcattcctatgatttttgcatgnnnnnnnnnnnnnttgatcaaagttaagactgtaaatagtggaagctcatcaa |
107 |
Q |
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| T |
34241990 |
ttaagtagtaactgtgttcacagtttcattcctatgatttttgcatgaaaaataaaaaaattgatcaaagttaagactgtaaatagtggaagctcatcaa |
34241891 |
T |
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| Q |
108 |
t |
108 |
Q |
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| T |
34241890 |
t |
34241890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 34241751 - 34241699
Alignment:
| Q |
245 |
aattgtatatgtcataaatatacttgtgacagctaatatccaaccatgatcga |
297 |
Q |
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| T |
34241751 |
aattgtatatgtcataaatatacttgtgacagctaatatccaaccatgatcga |
34241699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 34241835 - 34241797
Alignment:
| Q |
160 |
ttaatgtgaaaatgcgattttataaagctaaaatgaatg |
198 |
Q |
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| T |
34241835 |
ttaatgtgaaaatgcgattttataaagctaaaatgaatg |
34241797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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