View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0181-INSERTION-7 (Length: 619)
Name: NF0181-INSERTION-7
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0181-INSERTION-7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Original strand, 39559479 - 39560091
Alignment:
| Q |
8 |
ttttactcattggttctaggaggaaatgcatgcaaaagaagagattgttttctatataccgtcaaactttttgcacatacatccgatcaaaatatgttat |
107 |
Q |
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| T |
39559479 |
ttttactcattggttctaggaggaaatgcatgcaaaagaagagattgttttctatataccgtaaaactttttgcacatacatccgatcaaaatatgttat |
39559578 |
T |
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| Q |
108 |
aaagagatattgatagctatattttaggaacgaatttaaacaagtgacattattgagttttgatttgataaatgcatgtgtaaaaaagttttacactatt |
207 |
Q |
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| T |
39559579 |
aaagagatattgatagctatattttaggaacgaacttaaacaagtgacattattgagttttgatttgataaatgcacgtgtaaaaaagttttacactatt |
39559678 |
T |
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| Q |
208 |
gatatatacaaattaaatccgttgaagaaataaaaaatttgagtgagggagtatgtaaatgttgggatatccattagagttcttaaagtggtttgtcgaa |
307 |
Q |
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| T |
39559679 |
gatatatacaaattaaatccgttgaagaaataaaaaaattgagtgagggagtatgtaaatgttgggatatccattagagttcttaaagtggtttgtcgaa |
39559778 |
T |
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| Q |
308 |
gcaaaaaacgatata-nnnnnnnnaaatgtaggattttcctccggccggttaattttttcgccatctctcttatttcattcttgacttgaactcaagaag |
406 |
Q |
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| T |
39559779 |
gcaaaaagcaagatatttttttttaaatgtaggattttcctctggccggttagttttttcgccatctctcttatttcattcttgacttgaactcaagaag |
39559878 |
T |
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| Q |
407 |
ataatttcttccccacgcacatgcttttctaaaaacacacgatctctctggattacataattcaaatgtgtaaaaaacgtttgttttcttgcaagcttga |
506 |
Q |
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| T |
39559879 |
ataatttcttccccacgcacacgcttttctaaaaacacacgatctctctggattacataattcaaatgtgtaaaaaaagtttgttttcttgcaagcttga |
39559978 |
T |
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| Q |
507 |
aaagtgtaatccaaacaaatcgcgtgttttataaaatacgttggggagaagaaatcttcaatatcttattacatgtttagagtattatgcacattagctc |
606 |
Q |
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| T |
39559979 |
aaagtgtaatccaaacaaatcgcgtgttttataaaatacgttggggagaagaaatcttcaatatcttattacatgtttagagtattatgcacattagctc |
39560078 |
T |
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| Q |
607 |
aatttatgttgga |
619 |
Q |
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| T |
39560079 |
aatttatgttgga |
39560091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 33567071 - 33567023
Alignment:
| Q |
178 |
aatgcatgtgtaaaaaagttttac-actattgatatatacaaattaaat |
225 |
Q |
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| T |
33567071 |
aatgcatgtgtaaaaaagttttacaacatttgatacatacaaattaaat |
33567023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 3214408 - 3214446
Alignment:
| Q |
188 |
taaaaaagttttacactattgatatatacaaattaaatc |
226 |
Q |
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| T |
3214408 |
taaaaaagttttacactgttgatatatacaaattaaatc |
3214446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 11759672 - 11759632
Alignment:
| Q |
185 |
gtgtaaaaaagttttacactattgatatatacaaattaaat |
225 |
Q |
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| T |
11759672 |
gtgtaaaaaagttttacagtatcgttatatacaaattaaat |
11759632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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