View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0181-INSERTION-8 (Length: 505)
Name: NF0181-INSERTION-8
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0181-INSERTION-8 |
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| [»] chr2 (10 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 10378628 - 10378130
Alignment:
| Q |
7 |
atctaactcatcatactcaggataaggattcttccatcaagaaaatgcaaccagtaggcttaaacaagaagaatgaggaaagagttccaagtcataaaac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10378628 |
atctaactcatcatactcaggataaggattcttccatcaagaaaatgcaaccagtaggcttaaacaagaagaatgaggaaagggttccaagtcataaaac |
10378529 |
T |
|
| Q |
107 |
aagaatgcttgagaagggaaataagagaaaggctatagcaaatagactagaatcccttagagttccatccaatgttgaatctccagccattactagtctt |
206 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10378528 |
aaaaatgcttgagaagggaaataagagaaaggctatagcaaatagactagagtcccttagagttccatccaatgttgaatcttcagccattactagtctt |
10378429 |
T |
|
| Q |
207 |
aaagaatggcttcctgcagatggaatatactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaaatgaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10378428 |
aaagaatggcttcctgcagatggaatatactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggaatgcaaatgaat |
10378329 |
T |
|
| Q |
307 |
ctcgtgaggattctatatttagcccagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattct |
406 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378328 |
cttgtgaggattctatatttagcccagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattct |
10378229 |
T |
|
| Q |
407 |
agagaatgtggaagaagaaattgatgaaggaatgcagaactaagacctttagtactctaccatatgcataaaaggttaaactcatacttttttggtgat |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10378228 |
agagaatgtggaagaagaaattgatgaaggaatgcagaactaagacctttagtactctaccatatgcataaaaggtcaaactcatacttttttggtgat |
10378130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 505
Target Start/End: Complemental strand, 10342604 - 10342123
Alignment:
| Q |
11 |
aactcatcatactcaggataaggattcttccatcaagaaaatgcaaccagtaggcttaaacaagaagaatgaggaaagagttccaagtcataaaacaaga |
110 |
Q |
| |
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|||||| |||| ||||||||||||||||||||| || || ||||||| |||| |||| |||| ||| |||||| ||||||||||||||||||| | |
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| T |
10342604 |
aactcaacataatcaggataaggattcttccattaaaaagatgcaactagtatgcttgaacatgaac---gaggaagtggttccaagtcataaaacaaaa |
10342508 |
T |
|
| Q |
111 |
atgcttgagaagggaaataagagaaaggctatagcaaatagactagaatcccttagagttccatccaatgttgaatctccagccattactagtcttaaag |
210 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||| || |
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| T |
10342507 |
atgcttgagaaggg--------------ctatagcaaatagactagaatcccttggagttccatccaatgttgaatctacagacattgctagtcttagag |
10342422 |
T |
|
| Q |
211 |
aatggcttcctgcagatggaata----tactctcctggatcttatgtcacaccaaaatttggaagctat--tcttcgatgaacattaggactgcaaatga |
304 |
Q |
| |
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|||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||| |
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| T |
10342421 |
aatggcttcctgaagatggaataaacctactctccttgatcttatgtcacaccaaaatttggaagctatattcttcaatgaacattaggaatccaaatga |
10342322 |
T |
|
| Q |
305 |
atctcgtgaggattctatatttagcccagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaatt |
404 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |
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| T |
10342321 |
atcttgtgaggattctatatttagcccagagttggtatctgcctttgaacagtgtatgcgaaagcttgaagcagatgaagaaaacgttctgaaacaaatt |
10342222 |
T |
|
| Q |
405 |
ctagagaatgtggaagaagaaattgatgaaggaatgcagaactaagacctttagtactctaccatatgcataaaaggttaaactcatacttttttggtga |
504 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
10342221 |
cttgagaatgtggaagaagaaattgatgaaggaaagtagaactaagtattttagtactttacc--atgcataaatggttaaactcatacttttttggtga |
10342124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 233 - 505
Target Start/End: Complemental strand, 10370162 - 10369892
Alignment:
| Q |
233 |
atactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaaatgaatctcgtgaggattctatat--ttagcc |
330 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||| ||||||||||||||| |||| |
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|
| T |
10370162 |
atactcttctggatcttatgtcac--caaaatttggaagctatttgtcaatgaacattaggaatgcaaatgaatctagtgaggattctatatatttagtt |
10370065 |
T |
|
| Q |
331 |
cagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattga |
430 |
Q |
| |
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||||||| |||| ||| ||||||||||||||||||||| |||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10370064 |
cagagttagtatatgcttttgaacagtgtatgcaaaagtttgaagaagaggaagagaacgttctgaaagaaattctagagaatgtggaagaagaaattga |
10369965 |
T |
|
| Q |
431 |
tgaaggaatgcagaactaagacctttagtactctaccatatgcataaaaggttaaactcatacttttttggtgat |
505 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||| ||| ||||||||||||| ||| ||||||| |||||||||| |
|
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| T |
10369964 |
tgaaggaatgcagaactaagaacttaagtgctccacc--atgcataaaaggtcaaagtcatactcttttggtgat |
10369892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 233 - 459
Target Start/End: Complemental strand, 10339484 - 10339250
Alignment:
| Q |
233 |
atactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaa--------atgaatctcgtgaggattctatat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||| |||||||||| |
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|
| T |
10339484 |
atactctcctggatcttatgtcacaccaaaatttggaagctattcttcaatgaacattaggattgcaattatgcaaatgaaactaatgatgattctatat |
10339385 |
T |
|
| Q |
325 |
ttagcccagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaaga |
424 |
Q |
| |
|
|||| || | || | |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10339384 |
ttagtcctgtgtcagcatctgcttttgaacagtgtatgcaaaagcttgaagaagaggaagaaaacattctgaaacaaattctagagaatgtggaagaaga |
10339285 |
T |
|
| Q |
425 |
aattgatgaaggaatgcagaactaagacctttagt |
459 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| |
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|
| T |
10339284 |
aattgatgaaggaatgcagaaccaagaactttagt |
10339250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 10363870 - 10363663
Alignment:
| Q |
116 |
tgagaagggaaataagagaaaggctatagcaaatagactagaatcccttagagttccatccaatgttgaatctccagccattactagtcttaaagaatgg |
215 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||| ||| |
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|
| T |
10363870 |
tgagaagggaagtaagagcaaggctgtagcaaatagactagaat-------agttccatccaatgttgaatctccaaccattgctagtcttagagagtgg |
10363778 |
T |
|
| Q |
216 |
cttcctgcagatggaata----tactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaaatgaatctcgt |
311 |
Q |
| |
|
||||||| |||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||| |
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|
| T |
10363777 |
cttcctgaagatggaaaacacctactctccttgatcttatgtcacactaaaatttggaagctattcttcaatgaacattaggaatacaaatgaatctaag |
10363678 |
T |
|
| Q |
312 |
gaggattctatattt |
326 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10363677 |
gaggattctatattt |
10363663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 233 - 451
Target Start/End: Complemental strand, 10345959 - 10345748
Alignment:
| Q |
233 |
atactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaaatgaatctcgtgaggattctatatttagccca |
332 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| ||||||||| ||| || |||||||| | ||||||||||||| |||| |||||||||||||| ||| |
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|
| T |
10345959 |
atactctcctcgatcttatgtcacacccaaatttagaagctattgttcaattaacattagaaatgcaaatgaatcttgtgatgattctatatttagtcca |
10345860 |
T |
|
| Q |
333 |
gagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatg |
432 |
Q |
| |
|
| ||| |||||| | ||||| |||||||||||||||| |||||||||||||||||| || ||||| |||||||||| ||||| ||||||||| |
|
|
| T |
10345859 |
gcgttagtatcttcttttga-------atgcaaaagcttgaagaagaggaagaaaacattcttaagaaaatttcagagaatgtgaaagaaaaaattgatg |
10345767 |
T |
|
| Q |
433 |
aaggaatgcagaactaaga |
451 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10345766 |
aaggaatgcagaactaaga |
10345748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 372 - 505
Target Start/End: Complemental strand, 10350335 - 10350204
Alignment:
| Q |
372 |
gaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaactaagacctttagtactctaccatat |
471 |
Q |
| |
|
|||| ||| |||||||||||||| || ||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||| ||| ||| || |
|
|
| T |
10350335 |
gaagaagaagaagaaaacattcttaagaaaatttcagagaatgtgacagaaaaaattgatgaaggaatgcagaactaagaactttagggctcaacc--at |
10350238 |
T |
|
| Q |
472 |
gcataaaaggttaaactcatacttttttggtgat |
505 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
10350237 |
gcataaaaggttaaactcatactgttttggtgat |
10350204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 10363665 - 10363609
Alignment:
| Q |
348 |
tttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaatt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10363665 |
tttgaacagtgtatgcaaaagcttgaagcagatgaagaaaacattctgaaacaaatt |
10363609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 10363952 - 10363887
Alignment:
| Q |
11 |
aactcatcatactcaggataaggattcttccatcaagaaaatgcaaccagtaggcttaaacaagaa |
76 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| ||||||| || ||||||| ||||| |
|
|
| T |
10363952 |
aactcatcatactcgggatgaggattcttccatcaagaaaaggcaaccattatgcttaaaaaagaa |
10363887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 10363613 - 10363573
Alignment:
| Q |
424 |
aaattgatgaaggaatgcagaactaagacctttagtactct |
464 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
10363613 |
aaattgatgaaggaatgcagaactaagaactttagaactct |
10363573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 348 - 505
Target Start/End: Complemental strand, 26573186 - 26573031
Alignment:
| Q |
348 |
tttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaact |
447 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| |||||| |||||| ||||||||| |||||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
26573186 |
tttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaact |
26573087 |
T |
|
| Q |
448 |
aagacctttagtactctaccatatgcataaaaggttaaactcatacttttttggtgat |
505 |
Q |
| |
|
|||| |||||| ||| ||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26573086 |
aagaactttagggctcaacc--atgcataaaaggttaaactcatactgttttggtgat |
26573031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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