View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0181-INSERTION-8 (Length: 505)
Name: NF0181-INSERTION-8
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0181-INSERTION-8
[» ] chr2 (10 HSPs)
[» ] chr4 (1 HSPs)
Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 10378628 - 10378130
Alignment:
Q
7
atctaactcatcatactcaggataaggattcttccatcaagaaaatgcaaccagtaggcttaaacaagaagaatgaggaaagagttccaagtcataaaac
106
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
T
10378628
atctaactcatcatactcaggataaggattcttccatcaagaaaatgcaaccagtaggcttaaacaagaagaatgaggaaagggttccaagtcataaaac
10378529
T
Q
107
aagaatgcttgagaagggaaataagagaaaggctatagcaaatagactagaatcccttagagttccatccaatgttgaatctccagccattactagtctt
206
Q
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
T
10378528
aaaaatgcttgagaagggaaataagagaaaggctatagcaaatagactagagtcccttagagttccatccaatgttgaatcttcagccattactagtctt
10378429
T
Q
207
aaagaatggcttcctgcagatggaatatactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaaatgaat
306
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
T
10378428
aaagaatggcttcctgcagatggaatatactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggaatgcaaatgaat
10378329
T
Q
307
ctcgtgaggattctatatttagcccagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattct
406
Q
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10378328
cttgtgaggattctatatttagcccagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattct
10378229
T
Q
407
agagaatgtggaagaagaaattgatgaaggaatgcagaactaagacctttagtactctaccatatgcataaaaggttaaactcatacttttttggtgat
505
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
T
10378228
agagaatgtggaagaagaaattgatgaaggaatgcagaactaagacctttagtactctaccatatgcataaaaggtcaaactcatacttttttggtgat
10378130
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 505
Target Start/End: Complemental strand, 10342604 - 10342123
Alignment:
Q
11
aactcatcatactcaggataaggattcttccatcaagaaaatgcaaccagtaggcttaaacaagaagaatgaggaaagagttccaagtcataaaacaaga
110
Q
|||||| |||| ||||||||||||||||||||| || || ||||||| |||| |||| |||| ||| |||||| ||||||||||||||||||| |
T
10342604
aactcaacataatcaggataaggattcttccattaaaaagatgcaactagtatgcttgaacatgaac---gaggaagtggttccaagtcataaaacaaaa
10342508
T
Q
111
atgcttgagaagggaaataagagaaaggctatagcaaatagactagaatcccttagagttccatccaatgttgaatctccagccattactagtcttaaag
210
Q
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||| ||
T
10342507
atgcttgagaaggg--------------ctatagcaaatagactagaatcccttggagttccatccaatgttgaatctacagacattgctagtcttagag
10342422
T
Q
211
aatggcttcctgcagatggaata----tactctcctggatcttatgtcacaccaaaatttggaagctat--tcttcgatgaacattaggactgcaaatga
304
Q
|||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||
T
10342421
aatggcttcctgaagatggaataaacctactctccttgatcttatgtcacaccaaaatttggaagctatattcttcaatgaacattaggaatccaaatga
10342322
T
Q
305
atctcgtgaggattctatatttagcccagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaatt
404
Q
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||
T
10342321
atcttgtgaggattctatatttagcccagagttggtatctgcctttgaacagtgtatgcgaaagcttgaagcagatgaagaaaacgttctgaaacaaatt
10342222
T
Q
405
ctagagaatgtggaagaagaaattgatgaaggaatgcagaactaagacctttagtactctaccatatgcataaaaggttaaactcatacttttttggtga
504
Q
|| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||
T
10342221
cttgagaatgtggaagaagaaattgatgaaggaaagtagaactaagtattttagtactttacc--atgcataaatggttaaactcatacttttttggtga
10342124
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 233 - 505
Target Start/End: Complemental strand, 10370162 - 10369892
Alignment:
Q
233
atactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaaatgaatctcgtgaggattctatat--ttagcc
330
Q
||||||| |||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||| ||||||||||||||| ||||
T
10370162
atactcttctggatcttatgtcac--caaaatttggaagctatttgtcaatgaacattaggaatgcaaatgaatctagtgaggattctatatatttagtt
10370065
T
Q
331
cagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattga
430
Q
||||||| |||| ||| ||||||||||||||||||||| |||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||
T
10370064
cagagttagtatatgcttttgaacagtgtatgcaaaagtttgaagaagaggaagagaacgttctgaaagaaattctagagaatgtggaagaagaaattga
10369965
T
Q
431
tgaaggaatgcagaactaagacctttagtactctaccatatgcataaaaggttaaactcatacttttttggtgat
505
Q
||||||||||||||||||||| ||| ||| ||| ||| ||||||||||||| ||| ||||||| ||||||||||
T
10369964
tgaaggaatgcagaactaagaacttaagtgctccacc--atgcataaaaggtcaaagtcatactcttttggtgat
10369892
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 233 - 459
Target Start/End: Complemental strand, 10339484 - 10339250
Alignment:
Q
233
atactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaa--------atgaatctcgtgaggattctatat
324
Q
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||| ||||||||||
T
10339484
atactctcctggatcttatgtcacaccaaaatttggaagctattcttcaatgaacattaggattgcaattatgcaaatgaaactaatgatgattctatat
10339385
T
Q
325
ttagcccagagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaaga
424
Q
|||| || | || | |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
T
10339384
ttagtcctgtgtcagcatctgcttttgaacagtgtatgcaaaagcttgaagaagaggaagaaaacattctgaaacaaattctagagaatgtggaagaaga
10339285
T
Q
425
aattgatgaaggaatgcagaactaagacctttagt
459
Q
|||||||||||||||||||||| |||| |||||||
T
10339284
aattgatgaaggaatgcagaaccaagaactttagt
10339250
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 10363870 - 10363663
Alignment:
Q
116
tgagaagggaaataagagaaaggctatagcaaatagactagaatcccttagagttccatccaatgttgaatctccagccattactagtcttaaagaatgg
215
Q
||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||| |||
T
10363870
tgagaagggaagtaagagcaaggctgtagcaaatagactagaat-------agttccatccaatgttgaatctccaaccattgctagtcttagagagtgg
10363778
T
Q
216
cttcctgcagatggaata----tactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaaatgaatctcgt
311
Q
||||||| |||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||||
T
10363777
cttcctgaagatggaaaacacctactctccttgatcttatgtcacactaaaatttggaagctattcttcaatgaacattaggaatacaaatgaatctaag
10363678
T
Q
312
gaggattctatattt
326
Q
|||||||||||||||
T
10363677
gaggattctatattt
10363663
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 233 - 451
Target Start/End: Complemental strand, 10345959 - 10345748
Alignment:
Q
233
atactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggactgcaaatgaatctcgtgaggattctatatttagccca
332
Q
|||||||||| |||||||||||||||| |||||| ||||||||| ||| || |||||||| | ||||||||||||| |||| |||||||||||||| |||
T
10345959
atactctcctcgatcttatgtcacacccaaatttagaagctattgttcaattaacattagaaatgcaaatgaatcttgtgatgattctatatttagtcca
10345860
T
Q
333
gagttggtatctgcctttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatg
432
Q
| ||| |||||| | ||||| |||||||||||||||| |||||||||||||||||| || ||||| |||||||||| ||||| |||||||||
T
10345859
gcgttagtatcttcttttga-------atgcaaaagcttgaagaagaggaagaaaacattcttaagaaaatttcagagaatgtgaaagaaaaaattgatg
10345767
T
Q
433
aaggaatgcagaactaaga
451
Q
|||||||||||||||||||
T
10345766
aaggaatgcagaactaaga
10345748
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 372 - 505
Target Start/End: Complemental strand, 10350335 - 10350204
Alignment:
Q
372
gaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaactaagacctttagtactctaccatat
471
Q
|||| ||| |||||||||||||| || ||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||| ||| ||| ||
T
10350335
gaagaagaagaagaaaacattcttaagaaaatttcagagaatgtgacagaaaaaattgatgaaggaatgcagaactaagaactttagggctcaacc--at
10350238
T
Q
472
gcataaaaggttaaactcatacttttttggtgat
505
Q
||||||||||||||||||||||| ||||||||||
T
10350237
gcataaaaggttaaactcatactgttttggtgat
10350204
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 10363665 - 10363609
Alignment:
Q
348
tttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaatt
404
Q
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
10363665
tttgaacagtgtatgcaaaagcttgaagcagatgaagaaaacattctgaaacaaatt
10363609
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 10363952 - 10363887
Alignment:
Q
11
aactcatcatactcaggataaggattcttccatcaagaaaatgcaaccagtaggcttaaacaagaa
76
Q
|||||||||||||| |||| ||||||||||||||||||||| ||||||| || ||||||| |||||
T
10363952
aactcatcatactcgggatgaggattcttccatcaagaaaaggcaaccattatgcttaaaaaagaa
10363887
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 10363613 - 10363573
Alignment:
Q
424
aaattgatgaaggaatgcagaactaagacctttagtactct
464
Q
|||||||||||||||||||||||||||| |||||| |||||
T
10363613
aaattgatgaaggaatgcagaactaagaactttagaactct
10363573
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 348 - 505
Target Start/End: Complemental strand, 26573186 - 26573031
Alignment:
Q
348
tttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaact
447
Q
||||||| |||||||||||||||||||| |||| |||||| |||||| ||||||||| |||||||||| ||||| |||||||||||||| |||||||||
T
26573186
tttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaact
26573087
T
Q
448
aagacctttagtactctaccatatgcataaaaggttaaactcatacttttttggtgat
505
Q
|||| |||||| ||| ||| ||||||||||||||||||||||||| ||||||||||
T
26573086
aagaactttagggctcaacc--atgcataaaaggttaaactcatactgttttggtgat
26573031
T
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HSP Overview ] [
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Alignment Overview ]
© Oklahoma State University
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