View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0181_high_1 (Length: 442)
Name: NF0181_high_1
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0181_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 22 - 424
Target Start/End: Original strand, 20736751 - 20737153
Alignment:
| Q |
22 |
catcatcataggtccttatggagcaaagagaatgaacttactgctgaaattgataaattgagagcagaagttgagaaggctgaaaagagtcttgatcacg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
20736751 |
catcatcataggtccttatggagcaaagagaatgaacttactgctgaaattgataaattgagagcagaagttgagaaggctgaaaagaatcttgatcatg |
20736850 |
T |
|
| Q |
122 |
cgattcctggtgtgagtagcatatcttaaaagcttcttttaatgtgctatttttcaatgcataaaggaaaaagaaagatcttgagattgatggcagtgaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20736851 |
cgattcctggtgtgagtagcatatcttaaaagcttcttttaatgtgctatttttcaatgcataaaggaaatagaaagatcttgagattgatggcagtgaa |
20736950 |
T |
|
| Q |
222 |
ggacgtcatcactctctgattttgaataagatgttttagggtgttttttgagtgacggaattagttctctgtaattatataatggtatttgtgactcagt |
321 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20736951 |
ggacatcatcactctctgattttgaataagatgtttcagggtgttttttgagtgacggaattagttctctgtaattatataatggtatttgtgactcagt |
20737050 |
T |
|
| Q |
322 |
gttttgtttatctaatattgagaaatgtagactacttagcatttgataagagtgcccgctattattatctgtccagttcggggatgatctgtcatgatga |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20737051 |
gttttgtttatctaatattgagaaatgtagactacttagcatttgataagagtgcccgctattattatctgtccagttcggggatgatctgtcatgatga |
20737150 |
T |
|
| Q |
422 |
tgt |
424 |
Q |
| |
|
||| |
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|
| T |
20737151 |
tgt |
20737153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 37632963 - 37633121
Alignment:
| Q |
29 |
ataggtccttatggagcaaagagaatgaacttactgctgaaattgataaattgagagcagaagttgagaaggctgaaaagagtcttgatcacgcgattcc |
128 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||| |
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| T |
37632963 |
ataggtccttatggagcagagagaatgaacttactgctgaaattgataaactgagagcagaagttgagaagactgaaaagagtcttgatcatgcaattcc |
37633062 |
T |
|
| Q |
129 |
tggtgtgagtagcatatcttaaaagcttctttt-aatgtgctatttttcaatgcataaa |
186 |
Q |
| |
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|||||| |||||| |||||||||||||||||| |||||| ||||| ||||||||||| |
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| T |
37633063 |
tggtgtaagtagcccatcttaaaagcttcttttaaatgtggtatttgccaatgcataaa |
37633121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 37809032 - 37809190
Alignment:
| Q |
29 |
ataggtccttatggagcaaagagaatgaacttactgctgaaattgataaattgagagcagaagttgagaaggctgaaaagagtcttgatcacgcgattcc |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||| |
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| T |
37809032 |
ataggtccttatggagcagagagaatgaacttactgctgaaattgataaactgagagcagaagttgagaagactgaaaagagtcttgatcatgcaattcc |
37809131 |
T |
|
| Q |
129 |
tggtgtgagtagcatatcttaaaagcttctttt-aatgtgctatttttcaatgcataaa |
186 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||| ||||| ||||||||||| |
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|
| T |
37809132 |
tggtgtaagtagcccatcttaaaagcttcttttaaatgtggtatttgccaatgcataaa |
37809190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 50927092 - 50926958
Alignment:
| Q |
29 |
ataggtccttatggagcaaagagaatgaacttactgctgaaattgataaattgagagcagaagttgagaaggctgaaaagagtcttgatcacgcgattcc |
128 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||| || ||||||| || || |||| |||| ||||| ||||||| |||| | | || ||||| |
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| T |
50927092 |
ataggtccttatggactcaagagaatgaacttacggctataactgataaagggaaagtagaacttgaaaaggccgaaaagaatcttcaacgtgcaattcc |
50926993 |
T |
|
| Q |
129 |
tggtgtgagtagcatatcttaaaagcttcttttaa |
163 |
Q |
| |
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||||||||||| |||||||||| |||||||||| |
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|
| T |
50926992 |
tggtgtgagtaaactatcttaaaaacttcttttaa |
50926958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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