View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0181_low_1 (Length: 453)

Name: NF0181_low_1
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0181_low_1
NF0181_low_1
[»] chr7 (26 HSPs)
chr7 (185-453)||(11572065-11572333)
chr7 (95-451)||(23125919-23126276)
chr7 (287-450)||(15870892-15871056)
chr7 (361-449)||(1878035-1878123)
chr7 (324-453)||(14114293-14114422)
chr7 (324-453)||(14423943-14424072)
chr7 (286-448)||(4549861-4550024)
chr7 (286-451)||(12222244-12222410)
chr7 (94-291)||(11015950-11016150)
chr7 (185-297)||(2501041-2501147)
chr7 (286-451)||(9396690-9396854)
chr7 (328-451)||(16422775-16422896)
chr7 (386-451)||(9762971-9763036)
chr7 (394-451)||(18361411-18361468)
chr7 (185-244)||(15871117-15871176)
chr7 (397-448)||(16307305-16307356)
chr7 (364-453)||(9063948-9064038)
chr7 (382-424)||(16307523-16307565)
chr7 (386-451)||(11016277-11016342)
chr7 (184-237)||(18361610-18361663)
chr7 (87-127)||(1878379-1878419)
chr7 (379-451)||(9803456-9803528)
chr7 (96-151)||(25807370-25807425)
chr7 (123-236)||(14114050-14114166)
chr7 (123-236)||(14423700-14423816)
chr7 (228-256)||(4549784-4549812)
[»] scaffold0092 (2 HSPs)
scaffold0092 (185-453)||(8165-8430)
scaffold0092 (97-142)||(8074-8119)
[»] chr3 (27 HSPs)
chr3 (266-451)||(11514000-11514183)
chr3 (72-449)||(2903019-2903373)
chr3 (185-451)||(16304972-16305240)
chr3 (310-451)||(13932148-13932289)
chr3 (282-451)||(15647925-15648093)
chr3 (304-451)||(17761898-17762045)
chr3 (304-451)||(19063218-19063365)
chr3 (341-451)||(15552302-15552412)
chr3 (305-451)||(19696002-19696149)
chr3 (305-451)||(19705616-19705763)
chr3 (369-451)||(12409668-12409750)
chr3 (349-451)||(19657791-19657892)
chr3 (372-451)||(17768828-17768907)
chr3 (372-451)||(19070129-19070208)
chr3 (361-453)||(1470012-1470104)
chr3 (310-448)||(13654156-13654296)
chr3 (349-448)||(13699589-13699689)
chr3 (185-240)||(16882368-16882423)
chr3 (294-344)||(12409759-12409809)
chr3 (349-448)||(3087766-3087866)
chr3 (348-423)||(16794101-16794177)
chr3 (349-424)||(20418464-20418540)
chr3 (382-424)||(8728812-8728854)
chr3 (382-424)||(9080699-9080741)
chr3 (184-234)||(13653994-13654044)
chr3 (191-240)||(3087622-3087671)
chr3 (232-297)||(12409824-12409889)
[»] chr6 (14 HSPs)
chr6 (285-451)||(20462113-20462279)
chr6 (123-449)||(15477595-15477925)
chr6 (384-451)||(31127139-31127206)
chr6 (386-451)||(15552249-15552314)
chr6 (394-451)||(26186013-26186070)
chr6 (94-256)||(14758292-14758456)
chr6 (369-451)||(14758588-14758670)
chr6 (185-315)||(18026704-18026834)
chr6 (185-240)||(31127355-31127410)
chr6 (382-424)||(23231464-23231506)
chr6 (382-424)||(24718543-24718585)
chr6 (94-127)||(15541990-15542023)
chr6 (72-124)||(15477916-15477968)
chr6 (386-418)||(17445485-17445517)
[»] chr1 (13 HSPs)
chr1 (94-447)||(2819052-2819412)
chr1 (349-451)||(31359550-31359652)
chr1 (350-451)||(25399625-25399726)
chr1 (382-448)||(16478458-16478524)
chr1 (382-451)||(14750875-14750944)
chr1 (285-344)||(31359502-31359561)
chr1 (96-142)||(10154013-10154060)
chr1 (394-451)||(18129723-18129780)
chr1 (73-125)||(8698818-8698870)
chr1 (185-240)||(21683138-21683193)
chr1 (398-444)||(21682929-21682975)
chr1 (94-142)||(25399361-25399410)
chr1 (96-128)||(10154114-10154146)
[»] chr2 (13 HSPs)
chr2 (147-440)||(22683465-22683760)
chr2 (224-451)||(22524589-22524819)
chr2 (286-451)||(25918835-25919000)
chr2 (185-449)||(27640017-27640267)
chr2 (304-451)||(19320159-19320307)
chr2 (346-451)||(33705771-33705876)
chr2 (349-453)||(19643443-19643547)
chr2 (292-449)||(27940180-27940338)
chr2 (188-296)||(33705924-33706032)
chr2 (361-451)||(14792778-14792868)
chr2 (185-240)||(19320378-19320433)
chr2 (185-240)||(24440702-24440757)
chr2 (185-256)||(19643638-19643711)
[»] chr8 (11 HSPs)
chr8 (285-453)||(12541820-12541988)
chr8 (286-453)||(17689545-17689713)
chr8 (349-451)||(27740109-27740211)
chr8 (304-451)||(1208452-1208600)
chr8 (285-433)||(19505250-19505400)
chr8 (361-446)||(24497918-24498003)
chr8 (329-451)||(24635609-24635732)
chr8 (94-177)||(17687963-17688046)
chr8 (188-256)||(27739945-27740013)
chr8 (185-256)||(19505448-19505519)
chr8 (382-419)||(26833372-26833409)
[»] chr4 (11 HSPs)
chr4 (304-453)||(17526201-17526349)
chr4 (349-451)||(17812121-17812223)
chr4 (381-453)||(23087943-23088015)
chr4 (185-256)||(17812261-17812332)
chr4 (349-442)||(20577515-20577609)
chr4 (185-258)||(20577359-20577432)
chr4 (185-240)||(13027853-13027908)
chr4 (185-252)||(17526377-17526444)
chr4 (185-237)||(16324502-16324554)
chr4 (185-237)||(20570985-20571037)
chr4 (87-127)||(24619628-24619668)
[»] chr5 (11 HSPs)
chr5 (185-444)||(20237192-20237447)
chr5 (361-451)||(26118402-26118492)
chr5 (185-256)||(27276137-27276208)
chr5 (361-451)||(34638972-34639062)
chr5 (327-448)||(31588793-31588916)
chr5 (394-448)||(18672492-18672546)
chr5 (373-446)||(20969500-20969573)
chr5 (349-428)||(27275973-27276053)
chr5 (362-448)||(20575694-20575781)
chr5 (185-240)||(31589022-31589077)
chr5 (318-424)||(13692633-13692741)
[»] scaffold0043 (2 HSPs)
scaffold0043 (382-453)||(1631-1702)
scaffold0043 (394-448)||(25426-25480)
[»] scaffold0758 (1 HSPs)
scaffold0758 (362-451)||(4546-4636)
[»] scaffold0498 (1 HSPs)
scaffold0498 (348-451)||(3070-3173)
[»] scaffold0388 (2 HSPs)
scaffold0388 (392-451)||(5683-5742)
scaffold0388 (185-297)||(5458-5571)
[»] scaffold0031 (1 HSPs)
scaffold0031 (365-451)||(105124-105209)
[»] scaffold0003 (1 HSPs)
scaffold0003 (328-451)||(11487-11608)
[»] scaffold0683 (1 HSPs)
scaffold0683 (304-438)||(576-712)
[»] scaffold0351 (2 HSPs)
scaffold0351 (394-444)||(9027-9077)
scaffold0351 (185-240)||(9231-9286)
[»] scaffold0002 (1 HSPs)
scaffold0002 (185-240)||(112284-112339)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 185 - 453
Target Start/End: Complemental strand, 11572333 - 11572065
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgtttaactaatttcaggttcttc 284  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||    
T  11572333 aatgccttctaattcctctgaaatatctgttgcttcagtcttctattccttctgcacatttgtgtcttcaaaaatccgtttaactaacttcaggttcttc 11572234  T
Q  285 acttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttg 384  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  11572233 acttcagactctaggtgatcttcatactctgacagtcagcttctgatggtcttcacactcgaatgtcttcagactctgacttgcaactaagcttctcttg 11572134  T
Q  385 taaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11572133 taaattcttttgctctcatttgttcttccataaccaataccttgttttaagacttataaattttagtat 11572065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 95 - 451
Target Start/End: Original strand, 23125919 - 23126276
Alignment:
Q  95 gtactatgcgcatgaaatgttggagtagtggagtagtgattgtgcaatcgtgctattgttcttctactgtcctttctctgtggt---gcaattaatgcct 191  Q
    |||||||||| |||||||||||||||| ||||||||||||||| |||| || ||||||| |||| |||| ||||||||  |||    |||  |||| |||    
T  23125919 gtactatgcgaatgaaatgttggagtaatggagtagtgattgtacaattgtactattgtccttccactgccctttctccatggataagcatctaatacct 23126018  T
Q  192 tctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgtttaactaatttcaggttcttcacttcag 291  Q
    || ||||||||| ||||| |  ||  |||||||||||||||||||||||||  | |||||||||| ||   |||  |||| ||||||||||||||||  |    
T  23126019 tccaattcctctcaaataacaattacttcagtcttctattccttctgcacacgtgtgtcttcaaatatccattttgctaacttcaggttcttcacttagg 23126118  T
Q  292 actctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattc 391  Q
    ||||||| ||| ||||| ||||||||  ||| |||||||| ||||||| |||  |||| ||||||||   || ||||||||||| ||| |||||||||||    
T  23126119 actctgg-tga-cttcagactctgacaatcagcttctgattgtcttcaaactttgatgccttcagactcagaattgcaactaagcttcccttgtaaattc 23126216  T
Q  392 ttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||| |||||||  ||||||||||| |||||||||||||||||||||||||||    
T  23126217 ttttgctctcaattgttctatcagaaccaatatcttgttttaagacttataaattttagt 23126276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 287 - 450
Target Start/End: Complemental strand, 15871056 - 15870892
Alignment:
Q  287 ttcagactctgggtgatcttcatactctgactgtcaacttctg-atggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgt 385  Q
    |||||||||| |||||||||||  ||||||| || | |||||| || |||||||||||| |||| ||| ||||  ||||||||||||||| ||| |||||    
T  15871056 ttcagactctaggtgatcttcagtctctgacagttagcttctggattgtcttcacactctgatgcctttagactctgacttgcaactaagcttcccttgt 15870957  T
Q  386 aaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttag 450  Q
    |||||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||||| ||||    
T  15870956 aaattcctttgctctaatttgtacttccagaacaaatactttgttttaagacttataaatattag 15870892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 361 - 449
Target Start/End: Complemental strand, 1878123 - 1878035
Alignment:
Q  361 tgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttta 449  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  1878123 tgacttgcaactaagcttctcttgaaaattcttttgctctcaattgttctttcagaaccaatactttgttttaagacttataaatttta 1878035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 324 - 453
Target Start/End: Original strand, 14114293 - 14114422
Alignment:
Q  324 cttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaata 423  Q
    |||| ||||||||||| ||||  ||||||||||||   |||||||||||||| ||| |||| ||||||||||| ||||| ||||||||| ||||||||||    
T  14114293 cttccgatggtcttcagactctaatgtcttcagactcagacttgcaactaagcttcacttgaaaattcttttgatctcaattgttcttctagaaccaata 14114392  T
Q  424 ccttgttttaagacttataaattttagtat 453  Q
     | |||||||| ||||||||||||||||||    
T  14114393 tcctgttttaaaacttataaattttagtat 14114422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 324 - 453
Target Start/End: Original strand, 14423943 - 14424072
Alignment:
Q  324 cttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaata 423  Q
    |||| ||||||||||| ||||  ||||||||||||   |||||||||||||| ||| |||| ||||||||||| ||||| ||||||||| ||||||||||    
T  14423943 cttccgatggtcttcagactctaatgtcttcagactcagacttgcaactaagcttcacttgaaaattcttttgatctcaattgttcttctagaaccaata 14424042  T
Q  424 ccttgttttaagacttataaattttagtat 453  Q
     | |||||||| ||||||||||||||||||    
T  14424043 tcctgttttaaaacttataaattttagtat 14424072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 448
Target Start/End: Original strand, 4549861 - 4550024
Alignment:
Q  286 cttcagactctgggtgatcttcatactctgactgtcaacttctg-atggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttg 384  Q
    ||||||||| ||||||| ||||| |||||||  |||| |||||| ||||||| || | || |||  ||| ||||  ||||||| ||||||| ||| ||||    
T  4549861 cttcagactttgggtgaacttcagactctgatagtcagcttctggatggtctgcaaattctgattacttgagactctgacttgtaactaagcttcccttg 4549960  T
Q  385 taaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
     |||||||||||||||| ||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  4549961 aaaattcttttgctctcttttgttctttcagaaccaatactttgctttaagacatataaatttt 4550024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 451
Target Start/End: Complemental strand, 12222410 - 12222244
Alignment:
Q  286 cttcagactctgggtgatcttcatactctgactgtcaacttctg-atggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttg 384  Q
    |||||||||| |||||| ||||| ||||| || |||| ||| || || ||||||| |||| ||  |||||| |   ||||||||||||||  ||| ||||    
T  12222410 cttcagactcggggtgaacttcagactctaacagtcagcttttggatagtcttcaaactctgacttcttcaaattctgacttgcaactaatcttcccttg 12222311  T
Q  385 taaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
     |||||| ||| |||| | ||||||||||||||||||||| || ||||||||| |||||||||||||    
T  12222310 aaaattcattttctctaacttgttcttccagaaccaatacttttttttaagacatataaattttagt 12222244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 291
Target Start/End: Original strand, 11015950 - 11016150
Alignment:
Q  94 tgtactatgcgcatgaaatgttggagtagtggag-tagtgattgtgcaatcgtgctattgttcttctactgtcctttctctgtggt---gcaattaatgc 189  Q
    ||||||||| ||| ||||||||||||||| |||| ||||| |||| ||||  | |||||||  ||| | ||||||||||||||||    ||| | |||||    
T  11015950 tgtactatgtgcaagaaatgttggagtaggggaggtagtggttgtacaattatactattgtctttc-attgtcctttctctgtggataagcattcaatgc 11016048  T
Q  190 cttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgt-ttaactaatttcaggttcttcactt 288  Q
    |||||||||| || ||| ||||  ||| | ||||||||||||||||||||| |||| |||||||||| || | |  ||||||| ||||||||||||||||    
T  11016049 cttctaattcttcggaa-tatccattgctccagtcttctattccttctgcatatttgtgtcttcaaatatctataataactaacttcaggttcttcactt 11016147  T
Q  289 cag 291  Q
    |||    
T  11016148 cag 11016150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 2501147 - 2501041
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgtttaactaatttcaggttcttc 284  Q
    ||||||||||||||| || |||||||  |||| | |||||||||||||||||| || |||| |||||| |||||      ||||||| ||||||||||||    
T  2501147 aatgccttctaattcttcagaaatattcgttgctccagtcttctattccttctacatatttgtgtcttaaaaaa------taactaacttcaggttcttc 2501054  T
Q  285 acttcagactctg 297  Q
    |||||||||||||    
T  2501053 acttcagactctg 2501041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 451
Target Start/End: Complemental strand, 9396854 - 9396690
Alignment:
Q  286 cttcagactctgggtgatcttcatactctgactgtcaacttctg-atggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttg 384  Q
    ||||| ||| ||||||| ||||||||| ||||  ||| |||||| || ||||||| |||| ||  ||||||||   | ||||||||||||||||| ||||    
T  9396854 cttcaaactttgggtgaacttcatactttgacaatcagcttctggatagtcttcagactctgacttcttcagattctaacttgcaactaagtttcccttg 9396755  T
Q  385 taaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
     |||||| |||||||| ||||||| ||||| || ||| || | ||||||||||  ||||||||||||    
T  9396754 aaaattcctttgctctaatttgttattccataagcaaaacttggttttaagac--ataaattttagt 9396690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 451
Target Start/End: Original strand, 16422775 - 16422896
Alignment:
Q  328 tgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaatacctt 427  Q
    |||||||||| | |||| |||||||| |||| |||| ||||||| ||| ||| |||| ||||| ||||||||| | |||||||| ||||||||||| |||    
T  16422775 tgatggtctttagactctgatgtcttgagactttga-ttgcaacaaagattcccttgaaaattattttgctcttaattgttctttcagaaccaata-ctt 16422872  T
Q  428 gttttaagacttataaattttagt 451  Q
     ||||||||  |||||||||||||    
T  16422873 tttttaagaaatataaattttagt 16422896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 9762971 - 9763036
Alignment:
Q  386 aaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||| |||||||| | |||| |||| ||||| ||||| ||||||||||||||||||||||||||    
T  9762971 aaattcctttgctctaaattgtacttctagaacaaatactttgttttaagacttataaattttagt 9763036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 18361468 - 18361411
Alignment:
Q  394 ttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||||| |||||||||  ||||||||||| |||||| |||||||||||||||||||    
T  18361468 ttgctctcttttgttcttttagaaccaatactttgtttcaagacttataaattttagt 18361411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 15871176 - 15871117
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatt 244  Q
    ||||||||||||||| || |||| || ||||| | |||||||||||||||||||||||||    
T  15871176 aatgccttctaattcttcagaaaaatttgttgctccagtcttctattccttctgcacatt 15871117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 448
Target Start/End: Complemental strand, 16307356 - 16307305
Alignment:
Q  397 ctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  16307356 ctctcttttgttctttcagaaccaatatcttgttttatgacttataaatttt 16307305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 453
Target Start/End: Complemental strand, 9064038 - 9063948
Alignment:
Q  364 cttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
    |||||||| |||| |||| |||||||||   | |||||||||||||||| |||||||||||| |   ||||||||||||||||||| ||||    
T  9064038 cttgcaacataagcttcttttgtaaatttcatagctctcatttgttctttcagaaccaatacttgagtttaagacttataaatttttgtat 9063948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 16307565 - 16307523
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaatac 424  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  16307565 ttgtaaattccattgctctcatttgttcttccagaaccaatac 16307523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 11016277 - 11016342
Alignment:
Q  386 aaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||| |||||| | ||||||||||||| ||||||| | ||| |||||||| |||||||||||||    
T  11016277 aaattcctttgctttaatttgttcttccaaaaccaatgctttgctttaagacatataaattttagt 11016342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 18361663 - 18361610
Alignment:
Q  184 taatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttct 237  Q
    ||||||||||||||||||||||||||  ||||| ||||  ||||||||||||||    
T  18361663 taatgccttctaattcctctgaaatagttgttgcttcaagcttctattccttct 18361610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 1878419 - 1878379
Alignment:
Q  87 tgtaacgtgtactatgcgcatgaaatgttggagtagtggag 127  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  1878419 tgtaacttttactatgcgcatgaaatgttggagtagtggag 1878379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 9803456 - 9803528
Alignment:
Q  379 ctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||| |||||| |||||||| | |||  |||| |||| |||||  ||||||||||||||||||||||||||    
T  9803456 ctcttgaaaattcctttgctctaaattgcacttctagaatcaatattttgttttaagacttataaattttagt 9803528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 25807370 - 25807425
Alignment:
Q  96 tactatgcgcatgaaatgttggagtagtggagtagtgattgtgcaatcgtgctatt 151  Q
    |||||||| || ||||||||||||||||||||||||| |||| |||| || |||||    
T  25807370 tactatgctcaggaaatgttggagtagtggagtagtggttgtacaattgtactatt 25807425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 14114050 - 14114166
Alignment:
Q  123 tggagtagtgattgtgcaatcgtgctattgttcttctactgtcctttctctgtggt---gcaattaatgccttctaattcctctgaaatatctgttgttt 219  Q
    |||||||||| |||| |||| ||  ||| || ||||  |||||||||||||||||    |||  |||||||||||||||| |||||||||  | ||| |     
T  14114050 tggagtagtggttgtacaattgtattatagtccttcccctgtcctttctctgtggataagcatctaatgccttctaattcatctgaaatagtttttgctc 14114149  T
Q  220 cagtcttctattccttc 236  Q
    |||||||||||||||||    
T  14114150 cagtcttctattccttc 14114166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 14423700 - 14423816
Alignment:
Q  123 tggagtagtgattgtgcaatcgtgctattgttcttctactgtcctttctctgtggt---gcaattaatgccttctaattcctctgaaatatctgttgttt 219  Q
    |||||||||| |||| |||| ||  ||| || ||||  |||||||||||||||||    |||  |||||||||||||||| |||||||||  | ||| |     
T  14423700 tggagtagtggttgtacaattgtattatagtccttcccctgtcctttctctgtggataagcatctaatgccttctaattcatctgaaatagtttttgctc 14423799  T
Q  220 cagtcttctattccttc 236  Q
    |||||||||||||||||    
T  14423800 cagtcttctattccttc 14423816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 4549784 - 4549812
Alignment:
Q  228 tattccttctgcacatttatgtcttcaaa 256  Q
    |||||||||||||||||||||||||||||    
T  4549784 tattccttctgcacatttatgtcttcaaa 4549812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 185 - 453
Target Start/End: Original strand, 8165 - 8430
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa-aatttgtttaactaatttcaggttctt 283  Q
    |||||||||||||||||||||||||   |||| ||||| ||   |||||||||||| | || |||||||||| ||     ||||||||||| ||||||||    
T  8165 aatgccttctaattcctctgaaataatcgttgcttcagact---attccttctgcaaacttgtgtcttcaaataacaaacttaactaattttaggttctt 8261  T
Q  284 cacttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctctt 383  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||| |||| |||||||   | ||||||||||||| |||  ||    
T  8262 cacttcagactctaggtga-cttcatactctgactgtcagcttctgatggtcttcagactctgatgacttcagattcttacttgcaactaagcttccgtt 8360  T
Q  384 gtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8361 gtaaattcttttgctctcatttgttctttcagaaccaataccttgttttaagacttataaattttagtat 8430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 8074 - 8119
Alignment:
Q  97 actatgcgcatgaaatgttggagtagtggagtagtgattgtgcaat 142  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||    
T  8074 actatgcgcatgaaatgttggagtagtggagtagtggttgtacaat 8119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 266 - 451
Target Start/End: Original strand, 11514000 - 11514183
Alignment:
Q  266 aactaatttcaggttcttcacttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgact 365  Q
    |||||| ||||||||||||||||||||||||||  |  ||||| ||||| || |||||||||||||||||| || |||| |||||| |||||| ||||||    
T  11514000 aactaacttcaggttcttcacttcagactctggtgg--cttcagactctaacagtcaacttctgatggtctccagactctgatgtcctcagactttgact 11514097  T
Q  366 tgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||| ||| |||  ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11514098 tgcaacaaagattcctttgaaaattcttttgctctcaattgttcttccagaaccaataccttgctttaagacttataaattttagt 11514183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 72 - 449
Target Start/End: Complemental strand, 2903373 - 2903019
Alignment:
Q  72 cagcagagacagagatgtaacgtgtactatgcgcatgaaatgttggagtagtggagtagtgattgtgcaatcgtgctattgttcttctactgtcctttct 171  Q
    ||||||||||| |  |||| | |||||||||||||||||||||||||||||| |||||||| ||||   ||     |||||| |||| | ||||||| ||    
T  2903373 cagcagagacacaactgtagcttgtactatgcgcatgaaatgttggagtagttgagtagtggttgt---at-----tattgtccttc-attgtccttact 2903283  T
Q  172 ctgtgg---tgcaattaatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgtttaac 268  Q
     |||||    |||   ||||||||||||||| || ||||||| |||||  |||||||||||||||||||| |||||| |||||||||| ||   ||||||    
T  2903282 ttgtggataagcatccaatgccttctaattcttcagaaatatttgttgcatcagtcttctattccttctgtacatttgtgtcttcaaacatccatttaac 2903183  T
Q  269 taatttcaggttcttcacttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgc 368  Q
    ||| ||||  ||||||| | ||||||||   ||||||| | ||||||||  ||| ||||| |||||||||| ||||                || |||||    
T  2903182 taacttcaaattcttcaatacagactct-catgatctttagactctgacaatcagcttctcatggtcttcagactc----------------tgtcttgc 2903100  T
Q  369 aactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttta 449  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  2903099 aactaagcttctcttgtaaattcttttgctctcatttattcttccagaaccaataccttgttttaagacttataaacttta 2903019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 451
Target Start/End: Complemental strand, 16305240 - 16304972
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa-aatttgtttaactaatttcaggttctt 283  Q
    ||||||||||| ||||||||||||||   ||| ||||| ||||||||||||||||| | ||||||||||||| ||    | || |||| | |||||||||    
T  16305240 aatgccttctatttcctctgaaatattcattgcttcaggcttctattccttctgcaaacttatgtcttcaaataaccaatatatctaactccaggttctt 16305141  T
Q  284 cacttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatg-tcttcagaccttgacttgcaact-aagtttctc 381  Q
     |||||||||||| ||||| ||||| |||||  |  |||  ||||||||  ||||| |||| |||| |||||| ||   ||||||||||  ||| |||      
T  16305140 gacttcagactctaggtga-cttcagactctagcattcagtttctgatgaacttcagactctgatggtcttcatactcagacttgcaacacaagcttcct 16305042  T
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  16305041 ttgtaaattacattgctctcatttgttcttccagaaccaatactttgttttaagacttataaaatttagt 16304972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 310 - 451
Target Start/End: Original strand, 13932148 - 13932289
Alignment:
Q  310 actctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttc 409  Q
    ||||||||||||| ||| | |||||||| | |||| |||||||||| |   |||||||||||  || |||  ||| ||||||||||||| ||| ||||||    
T  13932148 actctgactgtcagcttttaatggtctttagactctgatgtcttcaaaatctgacttgcaacatagcttcctttgaaaattcttttgctttcaattgttc 13932247  T
Q  410 ttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  13932248 ttccagaaccaatacattgttttaagacttataaattttagt 13932289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 451
Target Start/End: Original strand, 15647925 - 15648093
Alignment:
Q  282 ttcacttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctc 381  Q
    |||||||||| |||||||||| ||| | ||| ||||  ||| ||| ||||| |||||| |||| |||||||||||||    ||||||||| ||| |||||    
T  15647925 ttcacttcaggctctgggtga-cttgagactttgacaatcagcttatgatgctcttcagactctgatgtcttcagactaaaacttgcaacaaagcttctc 15648023  T
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||  ||||||| | || ||||||||||||||||||||||||||||||  |||||||||||||    
T  15648024 ttgtaaattcgcttgctcttaatttttcttccagaaccaataccttgttttaagatgtataaattttagt 15648093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 304 - 451
Target Start/End: Complemental strand, 17762045 - 17761898
Alignment:
Q  304 cttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcat 403  Q
    ||||| ||||||||| ||| |||||||||||||||| ||||  |  |||||||||   ||||| |||||||| ||  |||| |||||||||| ||||||     
T  17762045 cttcagactctgactttcagcttctgatggtcttcagactcttaattcttcagactcagacttacaactaagctttccttgaaaattctttttctctcaa 17761946  T
Q  404 ttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  17761945 ttgttctttcagaaccaatatcttgttgtaagacttataaattttagt 17761898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 304 - 451
Target Start/End: Complemental strand, 19063365 - 19063218
Alignment:
Q  304 cttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcat 403  Q
    ||||| ||||||||| ||| |||||||||||||||| ||||  |  |||||||||   ||||| |||||||| ||  |||| |||||||||| ||||||     
T  19063365 cttcagactctgactttcagcttctgatggtcttcagactcttaattcttcagactcagacttacaactaagctttccttgaaaattctttttctctcaa 19063266  T
Q  404 ttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  19063265 ttgttctttcagaaccaatatcttgttgtaagacttataaattttagt 19063218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 341 - 451
Target Start/End: Original strand, 15552302 - 15552412
Alignment:
Q  341 actcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagactta 440  Q
    |||| |||||||||||||   |||||||||| ||| |||||||||||||||  ||||||||| || |||||||| |||||||||||||||||||||| ||    
T  15552302 actctgatgtcttcagactaagacttgcaacaaagcttctcttgtaaattcgcttgctctcaatttttcttccataaccaataccttgttttaagacgta 15552401  T
Q  441 taaattttagt 451  Q
    |||||||||||    
T  15552402 taaattttagt 15552412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 305 - 451
Target Start/End: Original strand, 19696002 - 19696149
Alignment:
Q  305 ttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcat 403  Q
    |||| ||| |||||||||||||||||||||||||| |||| ||  |||||||||  | ||||||||| |||| |||  ||||||| || ||||||||||     
T  19696002 ttcagactttgactgtcaacttctgatggtcttcaaactctgacttcttcagactctaacttgcaacataagcttcctttgtaaaatcctttgctctcac 19696101  T
Q  404 ttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
     ||||||||| |||||||||| |||||| |||||||| ||||||||||    
T  19696102 ctgttcttcctgaaccaatactttgtttaaagacttacaaattttagt 19696149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 305 - 451
Target Start/End: Original strand, 19705616 - 19705763
Alignment:
Q  305 ttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcat 403  Q
    |||| ||| |||||||||||||||||||||||||| |||| ||  |||||||||  | ||||||||| |||| |||  ||||||| || ||||||||||     
T  19705616 ttcagactttgactgtcaacttctgatggtcttcaaactctgacttcttcagactctaacttgcaacataagcttcctttgtaaaatcctttgctctcac 19705715  T
Q  404 ttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
     ||||||||| |||||||||| |||||| |||||||| ||||||||||    
T  19705716 ctgttcttcctgaaccaatactttgtttaaagacttacaaattttagt 19705763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 369 - 451
Target Start/End: Complemental strand, 12409750 - 12409668
Alignment:
Q  369 aactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  12409750 aactaagcttctcttgaaaattctttttctctcatttgtccttccagaaccaatatcttgatttaagacttataaattttagt 12409668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 451
Target Start/End: Complemental strand, 19657892 - 19657791
Alignment:
Q  349 gtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    ||||||||||  |||||| |||||||| ||| |||  |||||||||| ||||||||||||||| |||||||||||| ||| |||||||||||||||| ||    
T  19657892 gtcttcagactctgacttccaactaagcttcactttaaaattctttt-ctctcatttgttctttcagaaccaatactttgctttaagacttataaatctt 19657794  T
Q  449 agt 451  Q
    |||    
T  19657793 agt 19657791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 17768907 - 17768828
Alignment:
Q  372 taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||| |||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| || |||||||||||||    
T  17768907 taagattctgttgaaaattcttttgctcttatttgttcttccaaaaccaatactttgttttaaaacatataaattttagt 17768828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 19070208 - 19070129
Alignment:
Q  372 taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||| |||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| || |||||||||||||    
T  19070208 taagattctgttgaaaattcttttgctcttatttgttcttccaaaaccaatactttgttttaaaacatataaattttagt 19070129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 1470012 - 1470104
Alignment:
Q  361 tgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
    ||||| ||||||||| ||||||||||||||| ||| |||| ||||||||||||| |||||||   ||| |||| ||| |||||||||||||||    
T  1470012 tgactagcaactaagcttctcttgtaaattcctttactctaatttgttcttccaaaaccaatgatttgctttatgacatataaattttagtat 1470104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 448
Target Start/End: Original strand, 13654156 - 13654296
Alignment:
Q  310 actctgactgtcaacttctgatggtcttcacactcggat-gtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcatttgt 407  Q
    |||||| | |||| |||||||||||||||| |||| | | ||||||||||| || |||||||| |||| |||  |||| |||||  || ||||| |||||    
T  13654156 actctggcagtcagcttctgatggtcttcagactctggtagtcttcagaccctgtcttgcaacataagcttcctttgttaattcgatttctctcttttgt 13654255  T
Q  408 tcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    |||| ||||| |||||| | | |||||||||||||||||||    
T  13654256 tctttcagaatcaatacttggatttaagacttataaatttt 13654296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 448
Target Start/End: Original strand, 13699589 - 13699689
Alignment:
Q  349 gtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattt 447  Q
    ||||||||||  || |||||||| |||| |||  ||| ||||||  |||||||| ||||||||| |||||||||||| ||| ||||||||||||||||||    
T  13699589 gtcttcagactctgtcttgcaacataagcttcctttgcaaattccattgctctcttttgttctttcagaaccaatactttgatttaagacttataaattt 13699688  T
Q  448 t 448  Q
    |    
T  13699689 t 13699689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 16882368 - 16882423
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    |||||||| |||||||||||||||| |||||||| ||| |||| ||||||||||||    
T  16882368 aatgccttttaattcctctgaaatagctgttgttgcaggcttccattccttctgca 16882423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 12409809 - 12409759
Alignment:
Q  294 tctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactc 344  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||| ||||    
T  12409809 tctgggtgatcttcagactctgacagtcatcttctgatggtcttcagactc 12409759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 448
Target Start/End: Original strand, 3087766 - 3087866
Alignment:
Q  349 gtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattt 447  Q
    ||||||||||   |||||||||| |||| |||  ||||||||||  |||||||| |||||||||| ||||||||||| ||  |||||| |||| ||||||    
T  3087766 gtcttcagactaagacttgcaacataagcttcctttgtaaattccattgctctcttttgttcttctagaaccaatactttaatttaagccttacaaattt 3087865  T
Q  448 t 448  Q
    |    
T  3087866 t 3087866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 16794177 - 16794101
Alignment:
Q  348 tgtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaata 423  Q
    ||||||||||| ||| |||||||| |||| |||| ||||| |||| ||||||||| |||||| || |||||||||||    
T  16794177 tgtcttcagactttgtcttgcaacataagcttcttttgtagattcctttgctctcttttgttgtttcagaaccaata 16794101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 20418464 - 20418540
Alignment:
Q  349 gtcttcagaccttgacttgcaactaa-gtttctcttgtaaattcttttgctctcatttgttcttccagaaccaatac 424  Q
    |||||||||| ||| |||||||| || | |||| ||||||||||  |||||||||||||||||| || |||||||||    
T  20418464 gtcttcagactttgtcttgcaacaaaagcttcttttgtaaattccattgctctcatttgttctttcaaaaccaatac 20418540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 8728854 - 8728812
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaatac 424  Q
    ||||||||||  |||||||||||||||||||||||||| ||||    
T  8728854 ttgtaaattccattgctctcatttgttcttccagaacctatac 8728812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 9080741 - 9080699
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaatac 424  Q
    ||||||||||  |||||||||||||||||||||||||| ||||    
T  9080741 ttgtaaattccattgctctcatttgttcttccagaacctatac 9080699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 13653994 - 13654044
Alignment:
Q  184 taatgccttctaattcctctgaaatatctgttgtttcagtcttctattcct 234  Q
    ||||||||||||||||||||||||||  ||||| | ||| |||||||||||    
T  13653994 taatgccttctaattcctctgaaatagttgttgctccaggcttctattcct 13654044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 3087622 - 3087671
Alignment:
Q  191 ttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||||||||    
T  3087622 ttctaattcctctgaaagagttgttgcttcaggcttctattccttctgca 3087671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 12409889 - 12409824
Alignment:
Q  232 ccttctgcacatttatgtcttcaaaaatttgtttaactaatttcaggttcttcacttcagactctg 297  Q
    |||||| ||||||| ||||||||||  |   ||||||||  |||||||||||||||||||||||||    
T  12409889 ccttctccacatttgtgtcttcaaatttccatttaactaccttcaggttcttcacttcagactctg 12409824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 285 - 451
Target Start/End: Original strand, 20462113 - 20462279
Alignment:
Q  285 acttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttg 384  Q
    ||||||| ||||||| |||||| | ||| |||| |||| |||||||||||||||| |||  |||||||||||||   |||||||||||||| ||| ||||    
T  20462113 acttcaggctctgggagatctttagactttgacagtcagcttctgatggtcttcagactttgatgtcttcagactcagacttgcaactaagcttcccttg 20462212  T
Q  385 taaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  20462213 taaattctttttctctcatttgttcttccagaacaaataccttcttttaagacttataaattttagt 20462279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 123 - 449
Target Start/End: Complemental strand, 15477925 - 15477595
Alignment:
Q  123 tggagtagtgattgtgcaatcgtgctattgttcttctactgtcctttctctgtggt---gcaattaatgccttctaattcctctgaaatatctgttgttt 219  Q
    |||||||||| |||| |||| || |||||||||||| | |||||||||||| |||    |||   ||||||||||||||| || ||||||  |||||  |    
T  15477925 tggagtagtgcttgtacaattgtactattgttcttc-agtgtcctttctctttggataagcagccaatgccttctaattcatcagaaataattgttgcat 15477827  T
Q  220 cagtcttct-attccttctgcacatttatgtcttcaaaaatttg--tttaactaatttcaggttcttcacttcagactctgggtgatcttcatactctga 316  Q
    || |||||| ||||||||||||  ||| |||||||||| || |   ||||| ||| |||| |||||||| |||||||||||  ||| ||||| |||||||    
T  15477826 caatcttcttattccttctgcatgtttgtgtcttcaaatatatccatttaaataacttcaagttcttcatttcagactctga-tgaacttcagactctga 15477728  T
Q  317 ctgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccaga 416  Q
    | |||| ||| |||||||||||| |||   || |||||||||  |||||||||| |||| |||||||| |||||| |||| ||| | |||||||||||||    
T  15477727 cagtcagcttatgatggtcttcagactttaatttcttcagactctgacttgcaaataagcttctcttgaaaattcctttgttctaacttgttcttccaga 15477628  T
Q  417 accaataccttgttttaagacttataaatttta 449  Q
    |||||||| ||||||||||||||||||||||||    
T  15477627 accaatactttgttttaagacttataaatttta 15477595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 31127206 - 31127139
Alignment:
Q  384 gtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||  |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31127206 gtaaattcaattgctctcttttgttctttcagaaccaataccttgttttaagacttataaattttagt 31127139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 15552249 - 15552314
Alignment:
Q  386 aaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  15552249 aaattcttttgctcctatatgttcttccagaaccgataccttgttttaagacttataaattttagt 15552314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 26186013 - 26186070
Alignment:
Q  394 ttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  26186013 ttgctctcttttgttctttcagaaccaataccttgttttaagacttattaattttagt 26186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 256
Target Start/End: Original strand, 14758292 - 14758456
Alignment:
Q  94 tgtactatgcgcatgaaatgttggagtagtgga-gtagtgattgtgcaatcgtgctattgttcttctactgtcctttctctgtgg---tgcaattaatgc 189  Q
    ||||||||||||||||||||||||||||||||| |||||| |||| |||| ||  |||| | |||| |||||||||||||| |||    |||   |  ||    
T  14758292 tgtactatgcgcatgaaatgttggagtagtggaggtagtggttgtacaattgtattattatccttc-actgtcctttctctttggataagcatccatagc 14758390  T
Q  190 cttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa 256  Q
    ||| |||||| || | |||||  |||||||||||||| ||||||||||||| |||| ||||||||||    
T  14758391 cttttaattcatcag-aatattcgttgtttcagtcttttattccttctgcatatttgtgtcttcaaa 14758456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 451
Target Start/End: Original strand, 14758588 - 14758670
Alignment:
Q  369 aactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||||||||| | ||  ||||| || |||||||||||||    
T  14758588 aactaagcttctcttctaaattcctttcctctaatttgttcttccagaaccaatgcttttctttaatacatataaattttagt 14758670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 315
Target Start/End: Complemental strand, 18026834 - 18026704
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa-aatttgtttaactaatttcaggttctt 283  Q
    |||||||||||||||||||||||||  ||||| | ||| |||||| |||||||||| | ||  ||||||||| ||    ||||| ||| ||||| |||||    
T  18026834 aatgccttctaattcctctgaaatagttgttgctccaggcttctactccttctgcaaactttagtcttcaaataaccaatttaattaacttcagattctt 18026735  T
Q  284 cacttcagactctgggtgatcttcatactctg 315  Q
     |||||||||| ||||||| ||||| ||||||    
T  18026734 tacttcagactttgggtga-cttcagactctg 18026704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 31127410 - 31127355
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    |||||||| |||||||||||||||||  |||||| ||| |||||||||||| ||||    
T  31127410 aatgccttataattcctctgaaatatacgttgttccaggcttctattccttttgca 31127355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 23231464 - 23231506
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaatac 424  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||    
T  23231464 ttgtaaattcctttgctctcttttgttctttcagaaccaatac 23231506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 24718585 - 24718543
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaatac 424  Q
    ||||||||| | |||||||||||||||||||||||||| ||||    
T  24718585 ttgtaaattttattgctctcatttgttcttccagaacctatac 24718543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 15541990 - 15542023
Alignment:
Q  94 tgtactatgcgcatgaaatgttggagtagtggag 127  Q
    ||||||||||||||||||||||||||| ||||||    
T  15541990 tgtactatgcgcatgaaatgttggagttgtggag 15542023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 15477968 - 15477916
Alignment:
Q  72 cagcagagacagagatgtaacgtgtactatgcgcatgaaatgttggagtagtg 124  Q
    ||||||||||| || |||| | |||||||||| || |||||||||||||||||    
T  15477968 cagcagagacacagttgtagcttgtactatgcacaggaaatgttggagtagtg 15477916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 17445517 - 17445485
Alignment:
Q  386 aaattcttttgctctcatttgttcttccagaac 418  Q
    ||||||| |||||||||||||||||||||||||    
T  17445517 aaattctattgctctcatttgttcttccagaac 17445485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 94 - 447
Target Start/End: Complemental strand, 2819412 - 2819052
Alignment:
Q  94 tgtactatgcgcatgaaatgttggagtagtggagtagtgattgtgcaatcgtgctattgttcttctactgtcctttctctgtggt---gcaattaatgcc 190  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||| ||||        |||||||| ||||||| |||||||||     |||  |||||||    
T  2819412 tgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaat--------tgttcttccactgtccattctctgtgtataagcatctaatgcc 2819321  T
Q  191 ttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgtttaactaatttcaggttcttcacttca 290  Q
    ||||||||||||||||||| | |||| | ||||||||||||| |||| |||  || |||| ||||| |||  ||||||||| ||||||||||||| ||||    
T  2819320 ttctaattcctctgaaatagccgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaactaacttcaggttcttcatttca 2819221  T
Q  291 gactctgggtgatcttcatactctg-------------actgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtt 377  Q
     |||||    | |||||| ||||||             || ||||  ||||||||||||||| ||||  ||||| |||||||  |||||||||| |||||    
T  2819220 aactctaatag-tcttcagactctggtgacttcggactacagtcagtttctgatggtcttcagactcttatgtcctcagacccagacttgcaacaaagtt 2819122  T
Q  378 tctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattt 447  Q
    ||||||| ||||||||||| ||||| || |||| |||| |||||||||||||||||||||||||||||||    
T  2819121 tctcttgaaaattcttttgttctcaattattctaccaggaccaataccttgttttaagacttataaattt 2819052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 349 - 451
Target Start/End: Original strand, 31359550 - 31359652
Alignment:
Q  349 gtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    ||||||||||  |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||   |||||||||||||||||||| |    
T  31359550 gtcttcagactctgacttgcaactaagtttctcttgaaaaatcttttgctctcattcgttcttccataaccaataatatgttttaagacttataaattat 31359649  T
Q  449 agt 451  Q
    |||    
T  31359650 agt 31359652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 350 - 451
Target Start/End: Original strand, 25399625 - 25399726
Alignment:
Q  350 tcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttta 449  Q
    |||||||||  ||||||||||||| | |||||||| |||||| |||||||| ||||||||||  ||||||||||| |||||||||||| |||||||||||    
T  25399625 tcttcagactctgacttgcaactaggcttctcttgaaaattcatttgctctaatttgttcttatagaaccaatactttgttttaagacatataaatttta 25399724  T
Q  450 gt 451  Q
    ||    
T  25399725 gt 25399726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 382 - 448
Target Start/End: Complemental strand, 16478524 - 16478458
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  16478524 ttgtaaattcatttgctctcatttgttcttccagaaccaataccttgtttaaggacttataaatttt 16478458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 14750944 - 14750875
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||||||||||| |||||||||| |||||||||||| |||||| |||| ||||||||||||||    
T  14750944 ttgtaaattcttttgctcttatttgttctttcagaaccaatactttgtttcaagatttataaattttagt 14750875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 31359502 - 31359561
Alignment:
Q  285 acttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactc 344  Q
    |||||||||||||||||||||||| |||||||| |||| ||||| |||||||||| ||||    
T  31359502 acttcagactctgggtgatcttcagactctgacagtcagcttctaatggtcttcagactc 31359561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 10154013 - 10154060
Alignment:
Q  96 tactatgcgcatgaaatgttggagtagtgga-gtagtgattgtgcaat 142  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10154013 tactatgcgcatgaaatgttggagtagtggaggtagtgattgtacaat 10154060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 18129780 - 18129723
Alignment:
Q  394 ttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||||||||||||||| |||||||||||| |   || |||||||||||||||||||    
T  18129780 ttgctctcatttgttctttcagaaccaatacttgaattaaagacttataaattttagt 18129723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 8698818 - 8698870
Alignment:
Q  73 agcagagacagagatgtaacgtgtactatgcgcatgaaatgttggagtagtgg 125  Q
    |||||||||| || |||| | ||||||||| ||||||||||||||||||||||    
T  8698818 agcagagacacagttgtagcttgtactatgtgcatgaaatgttggagtagtgg 8698870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 21683193 - 21683138
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    ||||||||||||||||| |||||||   |||| ||||| |||||||||||||||||    
T  21683193 aatgccttctaattcctttgaaatagtcgttgcttcagacttctattccttctgca 21683138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 444
Target Start/End: Complemental strand, 21682975 - 21682929
Alignment:
Q  398 tctcatttgttcttccagaaccaataccttgttttaagacttataaa 444  Q
    |||| ||||||||| |||||||||||| ||||||||||||| |||||    
T  21682975 tctcttttgttctttcagaaccaatactttgttttaagactaataaa 21682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 25399361 - 25399410
Alignment:
Q  94 tgtactatgcgcatgaaatgttggagtagtgga-gtagtgattgtgcaat 142  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||| ||||    
T  25399361 tgtactatgtgcaggaaatgttggagtagtggaggtagtgattgtacaat 25399410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 10154114 - 10154146
Alignment:
Q  96 tactatgcgcatgaaatgttggagtagtggagt 128  Q
    |||||||| ||||||||||||||||||||||||    
T  10154114 tactatgcacatgaaatgttggagtagtggagt 10154146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 440
Target Start/End: Original strand, 22683465 - 22683760
Alignment:
Q  147 ctattgttcttctactgtcctttctctgtggt---gcaattaatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacat 243  Q
    ||||||| |||| |||||||||||||| |||    ||| | ||||||||||| ||||| |||||||   |||| |  ||| || |||||||||| ||||     
T  22683465 ctattgtccttccactgtcctttctctttggataagcattcaatgccttctatttcctttgaaatagtcgttgctctagttttatattccttctacacac 22683564  T
Q  244 ttatgtcttcaaa-aatttgtttaactaatttcaggttcttcacttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacac 342  Q
    || |||||||||| ||    ||||| | | |||||||||||||||||||||||||| ||| ||||||| |||||  ||||||||||||||||||||| ||    
T  22683565 ttgtgtcttcaaataaccaatttaaatgacttcaggttcttcacttcagactctgg-tga-cttcatattctgatagtcaacttctgatggtcttcagac 22683662  T
Q  343 tcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagactta 440  Q
    || |||||||| ||||  ||||||||||| ||| || |||||  ||||||||| ||||||  | |||||| |||||||||| ||||||||||||||||    
T  22683663 tctgatgtctttagactctgacttgcaacaaagcttatcttgacaattctttttctctcaactattcttcaagaaccaataacttgttttaagactta 22683760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 224 - 451
Target Start/End: Complemental strand, 22524819 - 22524589
Alignment:
Q  224 cttctattcctt-ctgcacatttatgtcttcaaaaatttgtt-taactaatttcaggttcttcacttcagactctgggtgatcttcatactctgactgtc 321  Q
    |||||||||||| ||||| |||| |||||||||| |||  |  ||||||| |||||||||||||||| || |||| ||||| | ||| |||| |||||||    
T  22524819 cttctattcctttctgcatatttgtgtcttcaaatattcataataactaacttcaggttcttcacttaagtctctaggtgaacatcagactcagactgtc 22524720  T
Q  322 aacttctg-atggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaacca 420  Q
    | |||||| |||||||||| |||| ||  ||||||||   ||||||||||||||  ||| |||| |||||  |||||||| |||||||||||||||||||    
T  22524719 agcttctggatggtcttcagactctgacttcttcagattctgacttgcaactaaacttcccttgaaaatttatttgctctaatttgttcttccagaacca 22524620  T
Q  421 ataccttgttttaagacttataaattttagt 451  Q
    |||| | |||||||||| |||||||||||||    
T  22524619 atacttggttttaagacatataaattttagt 22524589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 286 - 451
Target Start/End: Original strand, 25918835 - 25919000
Alignment:
Q  286 cttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaac-taagtttctcttg 384  Q
    ||||||||||||||| || |||| ||| || | |||||||||||||| |||||| |||| ||  || | || | ||| |||||||| |||| |||  |||    
T  25918835 cttcagactctgggt-attttcagactttggcagtcaacttctgatgttcttcagactctgacttcattaggctttggcttgcaacataagcttcctttg 25918933  T
Q  385 taaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25918934 taaattccattgctctcatttgttcttctagaaccaataccttgttttaagacttataaattttagt 25919000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 449
Target Start/End: Complemental strand, 27640267 - 27640017
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgtttaactaatttcaggttcttc 284  Q
    |||||||||||| || ||  ||||||   |||||||||||||||||||||||||||||||  ||| |||||| | |     |||||| |||  |||||||    
T  27640267 aatgccttctaactcttcaaaaatattccttgtttcagtcttctattccttctgcacattgctgttttcaaataat-----aactaaattcttgttcttc 27640173  T
Q  285 acttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttg 384  Q
    |||||||||||||  |||       |||||||| ||||  ||| ||||||||||| |||| |||||||| ||||  ||||||||||| ||| ||| ||||    
T  27640172 acttcagactctga-tga-------actctgacagtcagtttcggatggtcttcagactctgatgtctt-agactctgacttgcaaccaagcttcccttg 27640082  T
Q  385 taaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttta 449  Q
    ||||| ||||| ||||||||| ||| |||||||||||||||| |||| ||||||||||| |||||    
T  27640081 taaatactttttctctcattttttcctccagaaccaatacctagtttcaagacttataagtttta 27640017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 304 - 451
Target Start/End: Complemental strand, 19320307 - 19320159
Alignment:
Q  304 cttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaac-taag-tttctcttgtaaattcttttgctctc 401  Q
    |||||||| |||||||||| |||||||||||||||| |||| ||  ||||||||| |||||||||||| |||| ||||| ||||| ||||||||||| ||    
T  19320307 cttcataccctgactgtcagcttctgatggtcttcagactctgacttcttcagactttgacttgcaacataagctttct-ttgtagattcttttgctttc 19320209  T
Q  402 atttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||||||||| ||||| ||||||||| || || || |||||||    
T  19320208 atttgttcttccagaactaatactttgttttaaaacataaaatttttagt 19320159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 346 - 451
Target Start/End: Complemental strand, 33705876 - 33705771
Alignment:
Q  346 gatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaat 445  Q
    |||||||||||||   || ||||||| ||| |||| ||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  33705876 gatgtcttcagactcagatttgcaaccaagcttcttttgtaaatttttttgctctcatttgttcttctagaaccgataccttgttttaagacttataaat 33705777  T
Q  446 tttagt 451  Q
    ||||||    
T  33705776 tttagt 33705771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 19643547 - 19643443
Alignment:
Q  349 gtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    ||||||||||  ||||||||||||||| |||||||| ||| ||||||||||||| |||||||| || |||||||   |||||||||||||| ||||||||    
T  19643547 gtcttcagactctgacttgcaactaagcttctcttgaaaaatcttttgctctcaattgttcttacaaaaccaattatttgttttaagacttgtaaatttt 19643448  T
Q  449 agtat 453  Q
    |||||    
T  19643447 agtat 19643443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 449
Target Start/End: Original strand, 27940180 - 27940338
Alignment:
Q  292 actctgggtgatcttcatactctgactgtcaacttct-gatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaatt 390  Q
    ||||||||||| ||||| |||||||| |||| ||||| ||| ||||||| |||| ||  ||||||||   ||||||||||||||| ||| |||| ||| |    
T  27940180 actctgggtgaacttcagactctgacagtcatcttctagatagtcttcagactctgacttcttcagattctgacttgcaactaagcttcccttgaaaact 27940279  T
Q  391 cttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttta 449  Q
    | ||||||||  |||||||||||| ||||||||  || |||||| || |||||||||||    
T  27940280 cctttgctctattttgttcttccaaaaccaatattttattttaaaacatataaatttta 27940338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 296
Target Start/End: Complemental strand, 33706032 - 33705924
Alignment:
Q  188 gccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgtttaactaatttcaggttcttcact 287  Q
    ||||||||||| ||||||||||   |||| ||||||||||||||| |||||||||  | |||||||||| |    ||||||| | |||||||||||||||    
T  33706032 gccttctaatttctctgaaatagtcgttgcttcagtcttctattcattctgcacacctgtgtcttcaaatacccatttaacttacttcaggttcttcact 33705933  T
Q  288 tcagactct 296  Q
    |||||||||    
T  33705932 tcagactct 33705924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 451
Target Start/End: Complemental strand, 14792868 - 14792778
Alignment:
Q  361 tgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||| ||||||   ||| |||||||||||  |||| |||| ||| |||||| ||||||||||||||||| ||||||||||||||    
T  14792868 tgacttgcaacaaagttttctttgaaaattcttttgtactcaattgtcctttcagaactaataccttgttttaagagttataaattttagt 14792778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 19320433 - 19320378
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    ||||||||||||||||||||||||| |||||| |  || |||||||||||||||||    
T  19320433 aatgccttctaattcctctgaaatagctgttgctctagccttctattccttctgca 19320378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 24440757 - 24440702
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    ||||||||||||||||||||||||| | |||| | ||| |||||||||||||||||    
T  24440757 aatgccttctaattcctctgaaatagcagttgctccaggcttctattccttctgca 24440702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 19643711 - 19643638
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgt--ttcagtcttctattccttctgcacatttatgtcttcaaa 256  Q
    ||||||||||||||||||| |||||  |||| |  | ||||||| ||||||||||||||| || ||||||||||    
T  19643711 aatgccttctaattcctctaaaatagttgttttgctccagtcttatattccttctgcacacttgtgtcttcaaa 19643638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 285 - 453
Target Start/End: Original strand, 12541820 - 12541988
Alignment:
Q  285 acttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaact-aagtttctctt 383  Q
    |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| |||| ||| |||||||||  |||||| ||||| ||| |||  ||    
T  12541820 acttcagactctaggtga-cttcatactctgattgtcagcttctgatggtcttcagactctgatttcttcagactctgacttacaacttaagcttccttt 12541918  T
Q  384 gtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
    |||||||| |||||||||||||||||||  ||||||| ||| | |||| |||||||||||||||||||||    
T  12541919 gtaaattcatttgctctcatttgttcttttagaaccagtacttagtttaaagacttataaattttagtat 12541988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 286 - 453
Target Start/End: Original strand, 17689545 - 17689713
Alignment:
Q  286 cttcagactctgggtgatcttcatactctgactgtcaacttctg-atggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttg 384  Q
    ||||||||||||||||| ||||| |||||||  | ||||||||| || | ||||| |||| ||  |||| |||   ||||||||||||||| ||| ||||    
T  17689545 cttcagactctgggtgaacttcagactctgaaagccaacttctggatagacttcatactctgacttctttagattctgacttgcaactaagcttcccttg 17689644  T
Q  385 taaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
     |||||| |||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||||||    
T  17689645 aaaattcctttgctctaatttgttgttccagaaccaatactttgttttaagacatataaattttagtat 17689713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 451
Target Start/End: Original strand, 27740109 - 27740211
Alignment:
Q  349 gtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    ||||||||||  |||||||||||||||||||||||| |||||||||||||| ||||| || || || || |||||| || ||| ||||||| ||||||||    
T  27740109 gtcttcagactctgacttgcaactaagtttctcttgaaaattcttttgctcccatttattatttcataagcaatactttatttgaagacttgtaaatttt 27740208  T
Q  449 agt 451  Q
    |||    
T  27740209 agt 27740211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 451
Target Start/End: Complemental strand, 1208600 - 1208452
Alignment:
Q  304 cttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctca 402  Q
    ||||| |||||| | |||| ||||||||| |||||| |||| ||  |||||||||   |||||||||| |||| |||  |||||||||   |||||||||    
T  1208600 cttcagactctggcagtcagcttctgatgttcttcagactctgacttcttcagactcagacttgcaacataagcttcctttgtaaatttcattgctctca 1208501  T
Q  403 tttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    | | |||||||| ||||| |||||| |||||||||||||||||||||||    
T  1208500 tctattcttccaaaaccattacctttttttaagacttataaattttagt 1208452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 433
Target Start/End: Complemental strand, 19505400 - 19505250
Alignment:
Q  285 acttcagactctgggtgatcttcatactctgactgtcaacttctgatgg-tcttcacactcggatg-tcttcagaccttgacttgcaac-taagtttctc 381  Q
    |||||||||||||||||| ||||| ||| || | |||| |||||||||  |||||| |||| |||| |||||||||   |||||||||| ||||||||      
T  19505400 acttcagactctgggtga-cttcagactttggcagtcagcttctgatgaatcttcaaactctgatggtcttcagactcagacttgcaacataagtttcct 19505302  T
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaataccttgtttta 433  Q
    || ||||||   |||||||||||||||||||||||||||||| |||| ||||    
T  19505301 ttctaaatttcattgctctcatttgttcttccagaaccaatatcttgcttta 19505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 24498003 - 24497918
Alignment:
Q  361 tgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatt 446  Q
    |||||||||||   | ||| |||| |||||| |||||||| ||||||||||||||||||||||| ||||||||| || ||||||||    
T  24498003 tgacttgcaacatggcttcgcttgaaaattcatttgctctaatttgttcttccagaaccaatactttgttttaaaacgtataaatt 24497918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 451
Target Start/End: Original strand, 24635609 - 24635732
Alignment:
Q  329 gatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttg 428  Q
    ||||||||||| |||| ||  |||||||||   |||||||||||  | |||||||| |||||| | | |||| ||||||| ||||||||||||||  ||     
T  24635609 gatggtcttcagactccgacttcttcagactccgacttgcaacttggcttctcttgaaaattcctctactctaatttgttattccagaaccaataattta 24635708  T
Q  429 ttttaagactta-taaattttagt 451  Q
    ||||||||| || |||||||||||    
T  24635709 ttttaagacatactaaattttagt 24635732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 17687963 - 17688046
Alignment:
Q  94 tgtactatgcgcatgaaatgttggagtagtgga-gtagtgattgtgcaatcgtgctattgttcttctactgtcctttctctgtgg 177  Q
    |||| |||||||| ||||||||||||||||||| |||||| |||| |||| || ||||||| |||| | |||||||||| |||||    
T  17687963 tgtaatatgcgcaggaaatgttggagtagtggaggtagtggttgtacaattgtactattgtccttc-attgtcctttctttgtgg 17688046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 27739945 - 27740013
Alignment:
Q  188 gccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa 256  Q
    |||||||||||| || |||||||| |||| | || |||| ||||||||||||| |||| ||||||||||    
T  27739945 gccttctaattcttcagaaatatccgttgatccaatcttttattccttctgcatatttgtgtcttcaaa 27740013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 19505519 - 19505448
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa 256  Q
    ||||||||||||||||||||||||| | |||| |  ||  |||||||||||||||| | || ||||||||||    
T  19505519 aatgccttctaattcctctgaaatagccgttgctcgaggattctattccttctgcaaacttgtgtcttcaaa 19505448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 26833372 - 26833409
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaacc 419  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  26833372 ttgtagattctattgctctcatttgttcttccagaacc 26833409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 304 - 453
Target Start/End: Complemental strand, 17526349 - 17526201
Alignment:
Q  304 cttcatactctgactgtcaacttctgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcat 403  Q
    ||||| ||||||||  ||| |||||||||| ||||| |||| |||||||||||||  ||||||||||||||| ||||||||||||    |||||||||||    
T  17526349 cttcagactctgacaatcagcttctgatggccttcaaactctgatgtcttcagactctgacttgcaactaagcttctcttgtaaaaaaatttgctctcat 17526250  T
Q  404 ttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  17526249 ttgttcttccagaaccaatactatgtttt-agacttataaattttagtat 17526201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 349 - 451
Target Start/End: Complemental strand, 17812223 - 17812121
Alignment:
Q  349 gtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    ||||||||||  ||||||||||| ||  |||||||||||||| | ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  17812223 gtcttcagactatgacttgcaacaaaacttctcttgtaaattatgttgctctcaattgctcttccagaaccaatacattgttttaagacttataaatttt 17812124  T
Q  449 agt 451  Q
    |||    
T  17812123 agt 17812121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 23087943 - 23088015
Alignment:
Q  381 cttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
    |||| |||||| ||| || | ||||| ||||||||||||||||| |||||||||||| |||||||||||||||    
T  23087943 cttgaaaattcatttactataatttgctcttccagaaccaatactttgttttaagacatataaattttagtat 23088015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 17812332 - 17812261
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa 256  Q
    ||||||||||||||||||||||||| | |||| | ||  |||||||| |||||||| |||| ||||||||||    
T  17812332 aatgccttctaattcctctgaaatagccgttgctccaaacttctatttcttctgcaaatttgtgtcttcaaa 17812261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 442
Target Start/End: Original strand, 20577515 - 20577609
Alignment:
Q  349 gtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttata 442  Q
    ||||||||||  |||| |||||| |||| |||  ||||||||| | ||||| |||||| ||||| |||||||||||| |||||||||||| ||||    
T  20577515 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattctttcagaaccaatactttgttttaagacctata 20577609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 20577359 - 20577432
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaa 258  Q
    |||||||||||||| |||||||||| |  ||| ||||| |||||||| |||||||| | || ||||||||||||    
T  20577359 aatgccttctaatttctctgaaatagccattgcttcaggcttctatttcttctgcagacttgtgtcttcaaaaa 20577432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 13027853 - 13027908
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    ||||||||||||||||||||||||| | |||| | ||| |||| ||||||||||||    
T  13027853 aatgccttctaattcctctgaaatagccgttgctccaggcttccattccttctgca 13027908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 17526444 - 17526377
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtctt 252  Q
    ||||||||||||||| ||  |||||| ||||   |||||||||||||||||||||| |||| ||||||    
T  17526444 aatgccttctaattcttcaaaaatatttgttccatcagtcttctattccttctgcatatttgtgtctt 17526377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 16324554 - 16324502
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttct 237  Q
    |||||||||||||||||||||||||   |||||||||| |||| | |||||||    
T  16324554 aatgccttctaattcctctgaaatagtcgttgtttcaggcttcaaatccttct 16324502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 20571037 - 20570985
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttct 237  Q
    |||||||||||||||||||||||||   |||| | ||| ||||||||||||||    
T  20571037 aatgccttctaattcctctgaaatagtcgttgctccagacttctattccttct 20570985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 24619628 - 24619668
Alignment:
Q  87 tgtaacgtgtactatgcgcatgaaatgttggagtagtggag 127  Q
    |||||| ||||||| ||||| ||||||||||||||||||||    
T  24619628 tgtaacttgtactacgcgcaggaaatgttggagtagtggag 24619668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 444
Target Start/End: Complemental strand, 20237447 - 20237192
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaaaatttgtttaactaatttcaggttcttc 284  Q
    |||||||||||||||||||||||||   |||| |  || |||||||||||| |||| | |||||||||||| || |    ||||||| | ||  |||||     
T  20237447 aatgccttctaattcctctgaaatagtcgttgctcaaggcttctattccttttgcaaacttatgtcttcaataaata---taactaactccattttcttg 20237351  T
Q  285 acttcagactctgggtgatcttcatactctgactgtcaacttctgatggtcttcacactcggatg-tcttcagaccttgacttgcaactaagtttctctt 383  Q
    |||||||||||||||||| ||||| |||||  | |||| ||||||||| |||||| |||| |||| |||||||||   |||||||||| ||| |||| ||    
T  20237350 acttcagactctgggtga-cttcagactctcgcagtcagcttctgatgttcttcagactctgatggtcttcagactcagacttgcaac-aagcttctttt 20237253  T
Q  384 gtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaa 444  Q
      ||| || |||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  20237252 taaaaatcctttgctctcatttgttcttccagaaccaatactttgtttaaagacttataaa 20237192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 361 - 451
Target Start/End: Complemental strand, 26118492 - 26118402
Alignment:
Q  361 tgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||||  | || ||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  26118492 tgacttgcaacttggcttttcttgaaaattcttttgctctaaattgttcttccagaaccaatactttgttttaagacatataaattttagt 26118402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 27276208 - 27276137
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa 256  Q
    |||||||||||||||||||||||||  ||||||||||  ||||||||||||||||| |  ||||||||||||    
T  27276208 aatgccttctaattcctctgaaataattgttgtttcacgcttctattccttctgcatacatatgtcttcaaa 27276137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 451
Target Start/End: Original strand, 34638972 - 34639062
Alignment:
Q  361 tgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttata-aattttagt 451  Q
    |||||||||| |||||||| |||| ||||||||||||||||| || ||||| ||||||||| | |||| ||||||||||||| |||||||||    
T  34638972 tgacttgcaattaagtttcccttgaaaattcttttgctctcaattattctttcagaaccaa-aacttgatttaagacttatagaattttagt 34639062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 448
Target Start/End: Complemental strand, 31588916 - 31588793
Alignment:
Q  327 ctgatggtcttcacactcggat-gtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaatac 424  Q
    ||||||||||||| |||| ||| ||||| ||||  || |||||||| |||| |||| |||||| ||||||||||||| ||||||||| ||  |||||||     
T  31588916 ctgatggtcttcagactctgatagtctttagactctgtcttgcaacataagcttcttttgtaagttcttttgctctcttttgttctttcaataccaatag 31588817  T
Q  425 cttgttttaagacttataaatttt 448  Q
     | ||| ||| |||||||||||||    
T  31588816 ttggttataatacttataaatttt 31588793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 18672546 - 18672492
Alignment:
Q  394 ttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    |||||||||||||||||| |||||||||| ||||  || ||||||||||||||||    
T  18672546 ttgctctcatttgttctttcagaaccaattccttaattaaagacttataaatttt 18672492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 20969500 - 20969573
Alignment:
Q  373 aagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatt 446  Q
    |||||||  ||||||||||  |||||||||||||||||| ||||| |||||| |   |||||||||||||||||    
T  20969500 aagtttcctttgtaaattccattgctctcatttgttctttcagaaacaatacttgaatttaagacttataaatt 20969573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 27276053 - 27275973
Alignment:
Q  349 gtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttg 428  Q
    ||||||||||  ||||||||||| ||| ||||  ||  ||||| |||||||| |||||||||||| |||||||||||||||    
T  27276053 gtcttcagactctgacttgcaacataattttcctttaaaaattattttgctcccatttgttcttctagaaccaataccttg 27275973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 448
Target Start/End: Original strand, 20575694 - 20575781
Alignment:
Q  362 gacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    |||||||||| |||| |||  ||||||||||| ||| |||| ||||||||| || ||||||||| ||| || ||||||||| ||||||    
T  20575694 gacttgcaacataagattcatttgtaaattctattgttctcttttgttctttcaaaaccaatactttgattcaagacttattaatttt 20575781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 31589077 - 31589022
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    |||||||| ||||||||||||| || |||||| | ||| |||||||||||||||||    
T  31589077 aatgccttttaattcctctgaattagctgttgctccaggcttctattccttctgca 31589022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 424
Target Start/End: Original strand, 13692633 - 13692741
Alignment:
Q  318 tgtcaacttctgatggtcttcacactcggat-gtcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccag 415  Q
    ||||| |||||||||||||||| ||||   | ||||||||||  || |||||||| ||||||||  |||||||||   |||||||| | ||||||| |||    
T  13692633 tgtcatcttctgatggtcttcagactctactagtcttcagactctgtcttgcaacataagtttcctttgtaaatttcattgctctcttatgttctttcag 13692732  T
Q  416 aaccaatac 424  Q
    |||||||||    
T  13692733 aaccaatac 13692741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 453
Target Start/End: Complemental strand, 1702 - 1631
Alignment:
Q  382 ttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagtat 453  Q
    ||||||||||  ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  1702 ttgtaaattccattgctctcatttgttcttctagaaccaatactttgatttaagacttataaattttagtat 1631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 25480 - 25426
Alignment:
Q  394 ttgctctcatttgttcttccagaaccaataccttgttttaagacttataaatttt 448  Q
    |||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||    
T  25480 ttgctctcgtttgttattccaaaaccaatactttgttttaagacttataaatttt 25426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 451
Target Start/End: Original strand, 4546 - 4636
Alignment:
Q  362 gacttgcaac-taagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    |||||||||| |||| |||  |||||| |||  ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  4546 gacttgcaacataagcttcctttgtaatttccattgctctcatttgttttttcagaaccaataccttgttttaagacttataaattttagt 4636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 451
Target Start/End: Complemental strand, 3173 - 3070
Alignment:
Q  348 tgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattt 447  Q
    |||||||||||   ||||||| ||  || ||| |||| ||||| |||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  3173 tgtcttcagactcagacttgcgacatagcttcccttgaaaattattttgctctcatttattcttcctgaaccaataccatgtttaaagacttataaattt 3074  T
Q  448 tagt 451  Q
    ||||    
T  3073 tagt 3070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 5683 - 5742
Alignment:
Q  392 ttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  5683 ttttgctttcaattgttcttccagaaccaataccttgtttaaagacttataaattttagt 5742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 5458 - 5571
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgcacatttatgtcttcaaa-aatttgtttaactaatttcaggttctt 283  Q
    ||||||||| |||||||||||| || | |||| | ||| |||||||||| |||||| | || |||||||||| |||   | ||||||||| |||||||||    
T  5458 aatgccttcaaattcctctgaattagccgttgctccaggcttctattccatctgcaaacttgtgtcttcaaataataaatataactaattccaggttctt 5557  T
Q  284 cacttcagactctg 297  Q
    ||||||||| ||||    
T  5558 cacttcagattctg 5571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 451
Target Start/End: Original strand, 105124 - 105209
Alignment:
Q  365 ttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaataccttgttttaagacttataaattttagt 451  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |  || ||||||||| ||| |||||||| |||||||||||||    
T  105124 ttgcaactaagcttctcttg-aaattcttttgctctcatttgttatatcaaaaccaatactttgctttaagacatataaattttagt 105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 451
Target Start/End: Original strand, 11487 - 11608
Alignment:
Q  328 tgatggtcttcacactcggatgtcttcagaccttgacttgcaactaagtttctcttgtaaattcttttgctctcatttgttcttccagaaccaatacctt 427  Q
    |||||||||| | |||| |||||||| |||| |||| ||||||| ||| ||| |||| ||||| ||||||||| | |||||||| ||||||||||| |||    
T  11487 tgatggtctttagactctgatgtcttgagactttga-ttgcaacaaagattcccttgaaaattattttgctcttaattgttctttcagaaccaata-ctt 11584  T
Q  428 gttttaagacttataaattttagt 451  Q
     ||||||||  |||||||||||||    
T  11585 tttttaagaaatataaattttagt 11608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 438
Target Start/End: Original strand, 576 - 712
Alignment:
Q  304 cttcatactctgactgtcaacttctgatggtcttcacactcggatg-tcttcagaccttgacttgcaac-taagtttctcttgtaaattcttttgctctc 401  Q
    ||||| |||||| | |||| ||||||||| |||||| |||  |||| |||||||||  |||||| |||| |||| ||   ||||||||||  ||||||||    
T  576 cttcagactctggcagtcagcttctgatgttcttcaaactttgatggtcttcagactctgactttcaacataagcttgctttgtaaattccattgctctc 675  T
Q  402 atttgttcttccagaaccaataccttgttttaagact 438  Q
    ||||||| || |||||||||||| | |||||||||||    
T  676 atttgttattacagaaccaatacttagttttaagact 712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 9077 - 9027
Alignment:
Q  394 ttgctctcatttgttcttccagaaccaataccttgttttaagacttataaa 444  Q
    |||||||| ||||||||| |||||||||||| ||| |||||||||||||||    
T  9077 ttgctctcttttgttctttcagaaccaatactttgatttaagacttataaa 9027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 9286 - 9231
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    |||||||||||||||||| |||||||| |||| || || ||| |||||||||||||    
T  9286 aatgccttctaattcctcagaaatatccgttgctttaggcttttattccttctgca 9231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 112284 - 112339
Alignment:
Q  185 aatgccttctaattcctctgaaatatctgttgtttcagtcttctattccttctgca 240  Q
    |||||||||||||||||| |||||||| |||| || || ||| |||||||||||||    
T  112284 aatgccttctaattcctcagaaatatccgttgctttaggcttttattccttctgca 112339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 926 times since January 2019
Visitors: 1517