View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0181_low_10 (Length: 324)

Name: NF0181_low_10
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0181_low_10
NF0181_low_10
[»] chr1 (17 HSPs)
chr1 (102-246)||(13161703-13161847)
chr1 (102-244)||(13130012-13130154)
chr1 (102-246)||(13094581-13094725)
chr1 (102-246)||(13007382-13007526)
chr1 (102-240)||(13101188-13101326)
chr1 (110-246)||(13070050-13070186)
chr1 (102-246)||(13204641-13204785)
chr1 (102-246)||(19727335-19727479)
chr1 (164-234)||(19279096-19279166)
chr1 (164-228)||(13065141-13065205)
chr1 (164-234)||(12963803-12963873)
chr1 (164-246)||(30368036-30368118)
chr1 (165-234)||(13271780-13271849)
chr1 (164-220)||(13080793-13080849)
chr1 (165-223)||(13244450-13244508)
chr1 (168-237)||(13086298-13086367)
chr1 (102-135)||(13244384-13244417)
[»] chr8 (1 HSPs)
chr8 (185-239)||(36668314-36668368)
[»] chr7 (1 HSPs)
chr7 (185-239)||(12164462-12164516)
[»] chr6 (3 HSPs)
chr6 (170-236)||(377404-377470)
chr6 (170-235)||(347033-347098)
chr6 (170-235)||(355692-355757)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 102 - 246
Target Start/End: Complemental strand, 13161847 - 13161703
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161847 aagagatcaaagataattggctaacacaagaggataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 13161748  T
Q  202 aaccttaaggctttatcctcctataccctttgagcatatctgtgc 246  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  13161747 aaccttaaggctttatccacctataccttttgagcatatctgtgc 13161703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 13130154 - 13130012
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||||||||||||||||||| |||||||||||| |||||||||||  |||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  13130154 aagagatcaaagataattggttaacacaagagggtaatcggattactttgaggcatgtggatcttgataagctagtatacctccatggagctatatgtga 13130055  T
Q  202 aaccttaaggctttatcctcctataccctttgagcatatctgt 244  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  13130054 aaccttaaggctttatcctcctataccttttgagcatatctgt 13130012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 102 - 246
Target Start/End: Complemental strand, 13094725 - 13094581
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    ||||||||| |||||||||| |||||| ||||||| |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13094725 aagagatcagagataattggttaacacgagaggattatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtga 13094626  T
Q  202 aaccttaaggctttatcctcctataccctttgagcatatctgtgc 246  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  13094625 aaccttaaggctttatcctcctgtaccttttgagcatatctgtgc 13094581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 102 - 246
Target Start/End: Complemental strand, 13007526 - 13007382
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||| ||||||||||| ||||  ||||||||||| |||| || |   ||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  13007526 aagaaatcaaagataactggcccacacaagaggagaatcagactcctttgagagatgtggatcttgataagctagtgtacctccatggagctctatgtga 13007427  T
Q  202 aaccttaaggctttatcctcctataccctttgagcatatctgtgc 246  Q
    | || | ||||||||||||||| |||| |||||||||||||||||    
T  13007426 agccatgaggctttatcctcctgtaccttttgagcatatctgtgc 13007382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 240
Target Start/End: Complemental strand, 13101326 - 13101188
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||| ||||||||||| || |  ||||||||||| |||| ||||   | ||| |||| |  ||||||||||||||| |||||||||||||||||||||||    
T  13101326 aagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtacctccatggagctatatgtga 13101227  T
Q  202 aaccttaaggctttatcctcctataccctttgagcatat 240  Q
    |||||| ||||||||||||||| |||| |||||||||||    
T  13101226 aaccttgaggctttatcctcctgtaccttttgagcatat 13101188  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 110 - 246
Target Start/End: Original strand, 13070050 - 13070186
Alignment:
Q  110 aaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaa 209  Q
    |||||||| ||||  ||||||||||| |||| || |   | ||| ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||| |    
T  13070050 aaagataactggcccacacaagaggagaatcagactccttggagagatgtggatcttgataatctagtgtaccttcatggagctatatgtgaaaccttga 13070149  T
Q  210 ggctttatcctcctataccctttgagcatatctgtgc 246  Q
    | |||||||||||| |||| ||||||||||| |||||    
T  13070150 gactttatcctcctgtaccttttgagcatatatgtgc 13070186  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 246
Target Start/End: Complemental strand, 13204785 - 13204641
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||| ||||||||||| || |  ||||||||||| |||| ||||   | ||| |||| |  ||||||||||||||| ||||| |||||||||||||||||    
T  13204785 aagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtaccttcatggagctatatgtga 13204686  T
Q  202 aaccttaaggctttatcctcctataccctttgagcatatctgtgc 246  Q
    | |||| || |||||||||||| |||| ||||||||||| |||||    
T  13204685 agccttgagactttatcctcctgtaccttttgagcatatatgtgc 13204641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 246
Target Start/End: Complemental strand, 19727479 - 19727335
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||| ||||||||||| ||||  ||||||||||| || | || |   ||||| ||||||| ||||||||||||||| |||||||| |||| | ||||| |    
T  19727479 aagaaatcaaagataactggcccacacaagaggagaaccagactcctttgagagatgtggatcttgataagctagtgtacctccacggagatctatgtta 19727380  T
Q  202 aaccttaaggctttatcctcctataccctttgagcatatctgtgc 246  Q
    | |||| || |||||||||||| |||| ||||||||||| |||||    
T  19727379 agccttgagactttatcctcctgtaccttttgagcatatatgtgc 19727335  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 19279096 - 19279166
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccctttga 234  Q
    |||||||||||||| || || |||||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  19279096 cttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttga 19279166  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 13065141 - 13065205
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacc 228  Q
    |||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  13065141 cttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacc 13065205  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 12963803 - 12963873
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccctttga 234  Q
    ||||||||||| || || || ||||||||||| |||||| | ||||||||||||||||||||||| |||||    
T  12963803 cttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttga 12963873  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 30368036 - 30368118
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccctttgagcatatctgtgc 246  Q
    |||||||||||||| |||||||||||||||||||||||| || | ||| | |||||| || |||| ||||||| |||| ||||    
T  30368036 cttgataagctagtctacctccatggagctatatgtgaatccatgaggttgtatcctactgtaccttttgagcttatcagtgc 30368118  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 13271849 - 13271780
Alignment:
Q  165 ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccctttga 234  Q
    ||||||||||  | ||||| |||| |||||||||||||||||| || ||||||||||||||||| |||||    
T  13271849 ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttga 13271780  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 13080793 - 13080849
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcct 220  Q
    |||||||||||||| ||||| |||||||| ||||||||| |||||||||| ||||||    
T  13080793 cttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatcct 13080849  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 13244450 - 13244508
Alignment:
Q  165 ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 223  Q
    |||||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 13244508  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 13086367 - 13086298
Alignment:
Q  168 ataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccctttgagca 237  Q
    |||| ||||| ||||| |||||||||||||||||| | || ||||||||||||||| |||| ||| ||||    
T  13086367 ataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagca 13086298  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 13244384 - 13244417
Alignment:
Q  102 aagagatcaaagataattggctaacacaagagga 135  Q
    ||||||||||||||||||| ||||||||||||||    
T  13244384 aagagatcaaagataattgtctaacacaagagga 13244417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 36668368 - 36668314
Alignment:
Q  185 catggagctatatgtgaaaccttaaggctttatcctcctataccctttgagcata 239  Q
    ||||||||| |||||||| |||||||||||||||| || ||||| ||||||||||    
T  36668368 catggagctttatgtgaagccttaaggctttatccaccaataccttttgagcata 36668314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 12164516 - 12164462
Alignment:
Q  185 catggagctatatgtgaaaccttaaggctttatcctcctataccctttgagcata 239  Q
    ||||||||| |||||||| |||| ||||||||||| || ||||| ||||||||||    
T  12164516 catggagctttatgtgaagccttgaggctttatccgccgataccttttgagcata 12164462  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 377404 - 377470
Alignment:
Q  170 aagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccctttgagc 236  Q
    |||||||| || || ||||| |||||||||||  |  ||||||||| ||||||||||||||||||||    
T  377404 aagctagtttatcttcatggtgctatatgtgaggctataaggctttttcctcctataccctttgagc 377470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 347098 - 347033
Alignment:
Q  170 aagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccctttgag 235  Q
    |||||||| || || ||||| |||||||||||| |  ||||||||| |||||| ||||||||||||    
T  347098 aagctagtttatcttcatggtgctatatgtgaagctctaaggctttttcctccaataccctttgag 347033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 355757 - 355692
Alignment:
Q  170 aagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccctttgag 235  Q
    |||||||| || || ||||| |||||||||||| |  ||||||||| |||||| ||||||||||||    
T  355757 aagctagtttatcttcatggtgctatatgtgaagctctaaggctttttcctccaataccctttgag 355692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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