View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0181_low_16 (Length: 302)

Name: NF0181_low_16
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0181_low_16
NF0181_low_16
[»] chr1 (3 HSPs)
chr1 (122-238)||(42624025-42624141)
chr1 (99-164)||(31230278-31230343)
chr1 (80-111)||(42624138-42624169)
[»] chr5 (2 HSPs)
chr5 (99-232)||(30803696-30803829)
chr5 (80-235)||(10548193-10548350)
[»] chr6 (2 HSPs)
chr6 (99-238)||(27368799-27368940)
chr6 (99-238)||(27459146-27459287)
[»] scaffold0590 (1 HSPs)
scaffold0590 (99-162)||(4960-5023)
[»] chr3 (2 HSPs)
chr3 (172-238)||(25493513-25493580)
chr3 (188-232)||(6302546-6302590)
[»] chr8 (1 HSPs)
chr8 (183-236)||(13881235-13881288)
[»] scaffold0036 (1 HSPs)
scaffold0036 (182-225)||(43752-43795)
[»] chr4 (1 HSPs)
chr4 (99-162)||(8332566-8332629)
[»] chr7 (2 HSPs)
chr7 (177-226)||(21905973-21906022)
chr7 (171-235)||(47762074-47762139)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 42624141 - 42624025
Alignment:
Q  122 aaaacaagaggagaggttaggagaagaatgttgacatcacaatcttctttccttttttccttggctttctcttatttataagagtccacattcagatttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||     
T  42624141 aaaacaagaggagaggttaggagaagaatgttgacatcacaattttcatgccttttttccttggctttctcttatttataagagtccacattcacatttc 42624042  T
Q  222 ctataatgcccctttca 238  Q
    ||||||||| |||||||    
T  42624041 ctataatgctcctttca 42624025  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 31230278 - 31230343
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcacaat 164  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  31230278 aattgcagggaaataaggatagtaaaacaagagaagaggttaggaggagaatgttgacatcacaat 31230343  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 42624169 - 42624138
Alignment:
Q  80 acacacaacgagagagtacaattgcagcaaaa 111  Q
    ||||||||||||||||||||||||||||||||    
T  42624169 acacacaacgagagagtacaattgcagcaaaa 42624138  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 30803696 - 30803829
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcacaatcttctttccttttttccttggctttctcttattt 198  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |  | | |||||||||| |||||||||||    
T  30803696 aattgcaggaaaataaggatagtaaaacaagagaagaggttaggagaagaatgttgacatcacaatttccatatcctctttccttggcattctcttattt 30803795  T
Q  199 ataagagtccacattcagattttctataatgccc 232  Q
    ||||| ||  | ||||| |||| ||||| |||||    
T  30803796 ataagggtttatattcaaatttcctatattgccc 30803829  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 10548350 - 10548193
Alignment:
Q  80 acacacaacgagagagtacaattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca-atcttctttccttttt 178  Q
    |||||||| || |||||| |||||||| ||||||||||||||||||  |||| ||||||||| |||||||||||||||||||| || |||  | ||| ||    
T  10548350 acacacaatgacagagtaaaattgcaggaaaataaggatagtaaaatgagagaagaggttagaagaagaatgttgacatcacacatattccatacttatt 10548251  T
Q  179 tccttggc-tttctcttatttataagagtccacattcagattttctataatgcccctt 235  Q
    |||||||| |||||| |||||||||  ||||| ||||  |||||| ||||||||||||    
T  10548250 tccttggcttttctcatatttataaaggtccatattcctattttccataatgcccctt 10548193  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 27368940 - 27368799
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca-atctt-ctttccttttttccttggctttctcttat 196  Q
    |||||||  ||||||||||||||||||  |||| || |||||| |||||||||||||||||||| || || | | |||||||  |||||||||||| |||    
T  27368940 aattgcaagaaaataaggatagtaaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgcctttttctcttggctttctcgtat 27368841  T
Q  197 ttataagagtccacattcagattttctataatgcccctttca 238  Q
    ||||||||||||||||||| |||| || |||| || ||||||    
T  27368840 ttataagagtccacattcatatttcctgtaatacctctttca 27368799  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 27459287 - 27459146
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca-atctt-ctttccttttttccttggctttctcttat 196  Q
    |||||||  ||||||||||||||||||  |||| || |||||| |||||||||||||||||||| || || | | |||||||  |||||||||||| |||    
T  27459287 aattgcaagaaaataaggatagtaaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgcctttttctcttggctttctcgtat 27459188  T
Q  197 ttataagagtccacattcagattttctataatgcccctttca 238  Q
    ||||||||||||||||||| |||| || |||| || ||||||    
T  27459187 ttataagagtccacattcatatttcctgtaatacctctttca 27459146  T

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Target: scaffold0590 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 4960 - 5023
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca 162  Q
    |||||||| ||||||||||||||||||  |||| ||||||||| ||||||||||||||||||||    
T  4960 aattgcaggaaaataaggatagtaaaatgagagaagaggttagaagaagaatgttgacatcaca 5023  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 25493580 - 25493513
Alignment:
Q  172 ccttttttccttggctttctcttatttataagag-tccacattcagattttctataatgcccctttca 238  Q
    ||||||| |||||||||||||||||||||||||| || || |||| |||||||||| |||||||||||    
T  25493580 cctttttcccttggctttctcttatttataagagttcgacgttcacattttctatattgcccctttca 25493513  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 6302590 - 6302546
Alignment:
Q  188 ttctcttatttataagagtccacattcagattttctataatgccc 232  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||    
T  6302590 ttctcttatttataagagttcacattcatattttctatattgccc 6302546  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 13881288 - 13881235
Alignment:
Q  183 tggctttctcttatttataagagtccacattcagattttctataatgccccttt 236  Q
    |||| |||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  13881288 tggccttctcttatttataagagtccacattcacattttctatattgctccttt 13881235  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 43752 - 43795
Alignment:
Q  182 ttggctttctcttatttataagagtccacattcagattttctat 225  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||    
T  43752 ttggccttctcttatttataagagtccacattcaaatttcctat 43795  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 8332629 - 8332566
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca 162  Q
    |||||||  |||||||||||| |||||  |||| || ||||||||||||||| |||||||||||    
T  8332629 aattgcatgaaaataaggatattaaaatgagagaagcggttaggagaagaatattgacatcaca 8332566  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 21906022 - 21905973
Alignment:
Q  177 tttccttggctttctcttatttataagagtccacattcagattttctata 226  Q
    |||||||||| |||||||||||||||| |||||| |||| |||| |||||    
T  21906022 tttccttggccttctcttatttataagtgtccactttcatatttcctata 21905973  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 47762139 - 47762074
Alignment:
Q  171 tccttttttccttggcttt-ctcttatttataagagtccacattcagattttctataatgcccctt 235  Q
    ||||| ||||||||||||| ||| |||||||||| ||||| ||||  |||||| ||||||||||||    
T  47762139 tccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgcccctt 47762074  T

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