View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0181_low_17 (Length: 295)

Name: NF0181_low_17
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0181_low_17
NF0181_low_17
[»] scaffold0048 (1 HSPs)
scaffold0048 (65-279)||(76665-76879)
[»] scaffold0103 (3 HSPs)
scaffold0103 (87-252)||(17452-17622)
scaffold0103 (133-198)||(17639-17704)
scaffold0103 (171-212)||(17661-17702)
[»] chr2 (3 HSPs)
chr2 (87-252)||(16932654-16932824)
chr2 (133-198)||(16932572-16932637)
chr2 (171-212)||(16932574-16932615)
[»] chr5 (2 HSPs)
chr5 (174-278)||(25582728-25582831)
chr5 (65-139)||(25582860-25582934)
[»] chr7 (2 HSPs)
chr7 (172-278)||(9694430-9694535)
chr7 (65-163)||(9694528-9694626)
[»] chr4 (2 HSPs)
chr4 (172-278)||(13560807-13560912)
chr4 (65-163)||(13560905-13561003)
[»] chr1 (1 HSPs)
chr1 (65-139)||(20947091-20947165)


Alignment Details
Target: scaffold0048 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 65 - 279
Target Start/End: Complemental strand, 76879 - 76665
Alignment:
Q  65 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacatcatggattcttcattactaaacatc 164  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||| |||||     
T  76879 acatcatcaacagctcacaattacaacataatttcatttgtcaaactcatcatttacgtgatcattaatcaacatcatcgcttcttcattactcaacatt 76780  T
Q  165 gtcgccactcaacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttcctacgtactta 264  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  76779 gtcaccactcaacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttactacgtacttc 76680  T
Q  265 attctaacggcaacg 279  Q
    |||||||||||||||    
T  76679 attctaacggcaacg 76665  T

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Target: scaffold0103 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 17452 - 17622
Alignment:
Q  87 acaacataatttcatttgtcagactcattatttacgtgatcattaa------tcaacatcatggattcttcattactaaacatcgtcgccactcaacatc 180  Q
    ||||||||||||||| ||| |||||||| |||||||| ||||| ||      |||||||||||| |||||||||||| |||||||||   |||||||||     
T  17452 acaacataatttcatctgttagactcatcatttacgtcatcatcaacattattcaacatcatggtttcttcattactcaacatcgtcattactcaacatt 17551  T
Q  181 gtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttattt 252  Q
    ||||||  ||| ||||||||||  |||||| |||| ||||||||||| |||||||||| | |||||||||||    
T  17552 gtcatttctcagcattgtcatttatcaaca-ttgtaattaaaacctaaactcaacactggatccccttattt 17622  T

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Target: scaffold0103; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 17639 - 17704
Alignment:
Q  133 tcaacatcatggattcttcattactaaacatcgtcgccactcaacatcgtcattattcaacattgt 198  Q
    |||||||||||| ||||||||||||  ||||||||   ||||||||| ||||||  ||||||||||    
T  17639 tcaacatcatggtttcttcattactccacatcgtcattactcaacattgtcatttctcaacattgt 17704  T

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Target: scaffold0103; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 17661 - 17702
Alignment:
Q  171 actcaacatcgtcattattcaacattgtcattactcaacatt 212  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  17661 actccacatcgtcattactcaacattgtcatttctcaacatt 17702  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 252
Target Start/End: Complemental strand, 16932824 - 16932654
Alignment:
Q  87 acaacataatttcatttgtcagactcattatttacgtgatcattaa------tcaacatcatggattcttcattactaaacatcgtcgccactcaacatc 180  Q
    ||||||||||||||| ||| |||||||| |||||||| ||||| ||      |||||||||||| |||||||||||| |||||||||   |||||||||     
T  16932824 acaacataatttcatctgttagactcatcatttacgtcatcatcaacattattcaacatcatggtttcttcattactcaacatcgtcattactcaacatt 16932725  T
Q  181 gtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttattt 252  Q
    ||||||  ||| ||||||||||  |||||| |||| ||||||||||| |||||||||| | |||||||||||    
T  16932724 gtcatttctcagcattgtcatttatcaaca-ttgtaattaaaacctaaactcaacactggatccccttattt 16932654  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 16932637 - 16932572
Alignment:
Q  133 tcaacatcatggattcttcattactaaacatcgtcgccactcaacatcgtcattattcaacattgt 198  Q
    |||||||||||| ||||||||||||  ||||||||   ||||||||| ||||||  ||||||||||    
T  16932637 tcaacatcatggtttcttcattactccacatcgtcattactcaacattgtcatttctcaacattgt 16932572  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 16932615 - 16932574
Alignment:
Q  171 actcaacatcgtcattattcaacattgtcattactcaacatt 212  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  16932615 actccacatcgtcattactcaacattgtcatttctcaacatt 16932574  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 25582831 - 25582728
Alignment:
Q  174 caacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttcctacgtacttaattctaacg 273  Q
    |||||| || |||| |||||||||||||| ||||||||| ||||||||||| | ||||||| | | ||||||||||||| ||||| |||| || ||||||    
T  25582831 caacattgttattactcaacattgtcatttctcaacatt-gtcattaaaacttgcactcaatattggctccccttatttactacgcacttcatactaacg 25582733  T
Q  274 gcaac 278  Q
    |||||    
T  25582732 gcaac 25582728  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 25582934 - 25582860
Alignment:
Q  65 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacat 139  Q
    |||||||||| | |||  || ||||||| |||||||| |||||||||||| |||||||| |||||||||||||||    
T  25582934 acatcatcaataactcataactacaacagaatttcatatgtcagactcatcatttacgtcatcattaatcaacat 25582860  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 9694535 - 9694430
Alignment:
Q  172 ctcaacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttcctacgtacttaattctaa 271  Q
    |||||||| || |||| |||||||| ||||| || ||||||| | ||||||||  |||||||||| | ||||||||| ||| ||||| |||| |||||||    
T  9694535 ctcaacattgttattactcaacattttcatttcttaacattttt-attaaaactcacactcaacattggctccccttgtttactacgcacttcattctaa 9694437  T
Q  272 cggcaac 278  Q
    |||||||    
T  9694436 cggcaac 9694430  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 9694626 - 9694528
Alignment:
Q  65 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacatcatggattcttcattactaaacat 163  Q
    |||||||||| | |||  || ||||||| |||||||| |||||||||||| |||||||| |||||||||  |||| |||  ||||||||| || |||||    
T  9694626 acatcatcaataactcataactacaacagaatttcatatgtcagactcatcatttacgtcatcattaatgtacattatgatttcttcattgctcaacat 9694528  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 13560912 - 13560807
Alignment:
Q  172 ctcaacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttcctacgtacttaattctaa 271  Q
    |||||||| || |||| |||||||| ||||| || ||||||| | ||||||||  |||||||||| | ||||||||| ||| ||||| |||| |||||||    
T  13560912 ctcaacattgttattactcaacattttcatttcttaacattttt-attaaaactcacactcaacattggctccccttgtttactacgcacttcattctaa 13560814  T
Q  272 cggcaac 278  Q
    |||||||    
T  13560813 cggcaac 13560807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 13561003 - 13560905
Alignment:
Q  65 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacatcatggattcttcattactaaacat 163  Q
    |||||||||| | |||  || ||||||| |||||||| |||||||||||| |||||||| |||||||||  |||| |||  ||||||||| || |||||    
T  13561003 acatcatcaataactcataactacaacagaatttcatatgtcagactcatcatttacgtcatcattaatgtacattatgatttcttcattgctcaacat 13560905  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 20947091 - 20947165
Alignment:
Q  65 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacat 139  Q
    |||||||||| | |||  || ||||||| |||||||| |||||||||||| |||||||| |||||||||||||||    
T  20947091 acatcatcaataactcataactacaacagaatttcatatgtcagactcatcatttacgtcatcattaatcaacat 20947165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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