View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0181_low_3 (Length: 421)
Name: NF0181_low_3
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0181_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 7934535 - 7934943
Alignment:
| Q |
1 |
tcctgtatattatgtaatgtgtctcatgaaaaagtcataatattgtgttcgttattctttcattccattgttacaagatgtgccatagacgagttctttg |
100 |
Q |
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| T |
7934535 |
tcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcattattctttcattccattgttacaatatgtgccatagacgagttctttg |
7934634 |
T |
|
| Q |
101 |
tttctcagtgttacaatatgtgccatagacgagttctgtgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccattt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7934635 |
tttctcattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccattt |
7934734 |
T |
|
| Q |
201 |
agtgactacctatgatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttatctccatt |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7934735 |
agtgactacctaggatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttgtctccatt |
7934834 |
T |
|
| Q |
301 |
acaaacaaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggcctt-gcataattgtccacactgata |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7934835 |
acaaacaaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggccttcacataattgtccacactgata |
7934934 |
T |
|
| Q |
400 |
ccctcccct |
408 |
Q |
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| T |
7934935 |
ccctcccct |
7934943 |
T |
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