View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0181_low_5 (Length: 332)
Name: NF0181_low_5
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0181_low_5 |
 | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
| [»] scaffold0417 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 99 - 260
Target Start/End: Complemental strand, 17161156 - 17160995
Alignment:
| Q |
99 |
caataagcacttatgacccatattgaaaatatgaagttatagcttaattatgaaaatgatatatcccccttacctctaggtcttaaatccagtagcttaa |
198 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
17161156 |
caataagcacttatgacccgtattgaaaatatgaagttatagcttaattatgaaaatgatatatcccccttacctctaggtcttgaatccactagcttaa |
17161057 |
T |
|
| Q |
199 |
gcttcaatctcccctctagttccaagaaccctagctttctctagcttcctcttcttttctct |
260 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17161056 |
gcttcaatctcccctctagctccaagaaccctagctttctctagcttcctcttcttttctct |
17160995 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 16094927 - 16095080
Alignment:
| Q |
100 |
aataagcacttatgacccata-ttgaaaatatgaagttatagcttaatt-atgaaaatgatatatcccccttacctctaggtcttaaatccagtagctta |
197 |
Q |
| |
|
||||| ||||||||||||||| ||||||| | ||| |||| |||||||| |||||| || ||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
16094927 |
aataatcacttatgacccataattgaaaagaagaaattattgcttaattgatgaaaggaatctatcccc-ttacctctaggtcttgaatccactagctta |
16095025 |
T |
|
| Q |
198 |
agcttcaatctcccctctagttccaagaaccctagctttctctagcttcctcttct |
253 |
Q |
| |
|
||||||||||| |||| ||| ||| | |||||||||||||||||| |||||||||| |
|
|
| T |
16095026 |
agcttcaatct-ccctttagctcccaaaaccctagctttctctagtttcctcttct |
16095080 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 99 - 253
Target Start/End: Original strand, 13457166 - 13457322
Alignment:
| Q |
99 |
caataagcacttatgacccata-ttgaaaatatgaagttatagcttaatt-atgaaaatgatatatcccccttacctctaggtcttaaatccagtagctt |
196 |
Q |
| |
|
||||||||||||| |||||| | ||||||| |||| |||||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
13457166 |
caataagcacttacgacccaaaattgaaaagatgacgttatagcttaattgatgaaaagaatctatcccccttacctctaggtcttgaatccgctagctt |
13457265 |
T |
|
| Q |
197 |
aagcttcaatctcccctctagttccaagaaccctagctttctctagcttcctcttct |
253 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||| |||| |||||||||| |
|
|
| T |
13457266 |
aagcttcaatctcccctctagcccccaaaaccctagcttcctcttctttcctcttct |
13457322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 17364366 - 17364473
Alignment:
| Q |
99 |
caataagcacttatgacccata-ttgaaaatatgaag-ttatagcttaattatgaaaatgatatatcccccttacctctaggtcttaaatccagtagctt |
196 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||||||| || ||||||||||||| |||| |||||| |||||| |
|
|
| T |
17364366 |
caataatcacttatgacccataattgaaaagatgaaaattata---taattatgaaaataatttatcccccttacc------tcttgaatccactagctt |
17364456 |
T |
|
| Q |
197 |
aagcttcaatctcccct |
213 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
17364457 |
aggcttcaatctcccct |
17364473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 260
Target Start/End: Complemental strand, 12463602 - 12463439
Alignment:
| Q |
99 |
caataagcacttatgacccata-ttgaaaatatgaagttatagcttaatt-atgaaaatgatatatcccccttacctctaggtcttaaatccagtagctt |
196 |
Q |
| |
|
|||||| | ||||||||||||| ||||||| |||||||||||||| |||| |||||| || ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
12463602 |
caataatcgcttatgacccataattgaaaagatgaagttatagctcaattgatgaaatgaatctatcccccttacctctaggtcttgaatccactagctt |
12463503 |
T |
|
| Q |
197 |
aagcttcaatctcccctctagttccaagaaccctagctttctctagcttcctcttcttttctct |
260 |
Q |
| |
|
||||||||||||||| |||| ||| | ||||| ||||||||||| | ||||||| ||| |||| |
|
|
| T |
12463502 |
aagcttcaatctcccatctaactcccaaaacccaagctttctctatcctcctcttatttcctct |
12463439 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 23299808 - 23299857
Alignment:
| Q |
160 |
tatcccccttacctctaggtcttaaatccagtagcttaagcttcaatctc |
209 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||| |||| |||||| |
|
|
| T |
23299808 |
tatcccccttacctgtaggtcttgaatccactagcttacgcttaaatctc |
23299857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 18028411 - 18028339
Alignment:
| Q |
135 |
ttatagcttaattatgaaaatgatatatccccct-tacctctaggtcttaaatccagtagcttaagcttcaat |
206 |
Q |
| |
|
|||||||||||||||||||| ||| || |||| | ||||| ||| |||| | |||| |||||||||||||||| |
|
|
| T |
18028411 |
ttatagcttaattatgaaaaggatctacccccttatacctatagatcttgattccactagcttaagcttcaat |
18028339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 17771 - 17927
Alignment:
| Q |
100 |
aataagcacttatgacccat-attgaaaatatgaagttatagcttaatt-atgaaaatgatatatcccccttacctctaggtcttaaatccagtagctta |
197 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||| |||||| || |||| |
|
|
| T |
17771 |
aataatcatttatgacccatgatggaaaatatgaaattatagcttaattgatgaaatgaatctatcccccttacctctaggtcttgaatccactaactta |
17870 |
T |
|
| Q |
198 |
agcttcaatctcccctctagttccaagaaccctagctttctctagcttcctcttcttt |
255 |
Q |
| |
|
||||||||||||| |||||| || | | ||| ||||||||||||||||||||||||| |
|
|
| T |
17871 |
agcttcaatctcctctctagctctca-accccaagctttctctagcttcctcttcttt |
17927 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 25263481 - 25263620
Alignment:
| Q |
122 |
tgaaaatatgaagttatagcttaatt-atgaaaatgatatatcccccttacctctaggtcttaaatccagtagcttaagcttcaatctcccctctagttc |
220 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||| | ||||||||||| ||| |||||||| |||||| |||||||| |||||||||||||||||| || |
|
|
| T |
25263481 |
tgaaaagatgaaattatagcttaattgatgaaaagaacatatcccccttccctttaggtcttgaatccactagcttaaacttcaatctcccctctagctc |
25263580 |
T |
|
| Q |
221 |
caagaaccctagctttctctagcttcctcttcttttctct |
260 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
25263581 |
ttaaaccccaagctttctctagcttcctcttctttcctct |
25263620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 16228349 - 16228463
Alignment:
| Q |
99 |
caataagcacttatgacccatattgaaaatatgaagttatagcttaatt-atgaaaatgatatatcccccttacctctaggtcttaaatccagtagctta |
197 |
Q |
| |
|
|||||| ||| ||||||||||| | |||| |||| |||| |||||||| |||||| | || || ||||| | ||||||||||| |||||| ||||| | |
|
|
| T |
16228349 |
caataatcacatatgacccataatcaaaagttgaaattattgcttaattgatgaaagtaatctaccccccatttctctaggtcttgaatccactagctca |
16228448 |
T |
|
| Q |
198 |
agcttcaatctcccc |
212 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
16228449 |
agtttcaatctcccc |
16228463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 260
Target Start/End: Complemental strand, 14861202 - 14861039
Alignment:
| Q |
99 |
caataagcacttatgacccata-ttgaaaatatgaagttatagcttaattatgaaaatga-tatatcccccttacctctaggtcttaaatccagtagctt |
196 |
Q |
| |
|
|||||| ||||||||||||||| || |||| ||||||||||||||||||| |||| || | ||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
14861202 |
caataatcacttatgacccataattaaaaagatgaagttatagcttaattgataaaaggaatctatcccccttagctctaggtcttgaatccactagctt |
14861103 |
T |
|
| Q |
197 |
aagcttcaatctcccctctagttc--caagaaccctagctttctctagcttcctcttcttttctct |
260 |
Q |
| |
|
|||||||||||||||| |||| || ||| | ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
14861102 |
aagcttcaatctcccc-ctagctcttcaa-accccaagctttctctagcatcctcttcttttctct |
14861039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 3813 - 3973
Alignment:
| Q |
103 |
aagcacttatgacccata-ttgaaaatatgaagttatagcttaattatga-aaatgatatatcccccttacctctaggtcttaaatccagtagcttaagc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| ||||||||||||| | ||| ||| |||||||||||||| ||||| || |||||| |||||||||| |
|
|
| T |
3813 |
aagcacttatgacccataattgaaaagatgagattatagcttaattgagtgaaaggatctatcccccttacctataggttttcaatccactagcttaagc |
3912 |
T |
|
| Q |
201 |
ttcaatctcccctctagttccaagaaccctagc-tttctctagcttcctcttcttttctct |
260 |
Q |
| |
|
||||||||||||||||| || | | ||||| | |||||||| ||||||||||||| |||| |
|
|
| T |
3913 |
ttcaatctcccctctagctctcaaacccctaacttttctctaacttcctcttctttcctct |
3973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 52015 - 52130
Alignment:
| Q |
99 |
caataagcacttatgacccatattga-aaatatgaagttatagcttaatt-atgaaaatgatatatcccccttacctctaggtcttaaatccagtagctt |
196 |
Q |
| |
|
|||||| ||||||||||||||| | | ||| | ||| ||||||||||||| |||||| || ||||||| ||||||||||||||| | |||| |||||| |
|
|
| T |
52015 |
caataatcacttatgacccataatcacaaagaagaaattatagcttaattgatgaaatgaatctatcccctttacctctaggtcttgagtccactagctt |
52114 |
T |
|
| Q |
197 |
aagcttcaatctcccc |
212 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
52115 |
aagcttcaatctcccc |
52130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 255
Target Start/End: Complemental strand, 30165 - 30007
Alignment:
| Q |
99 |
caataagcacttatgacccata-ttgaaaatatgaagttatagcttaattatgaaaatga-tatatcccccttacctctaggtcttaaatccagtagctt |
196 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |||||||||| |||||| |||| || | ||| |||||||||||||||||| |||| | || ||| |
|
|
| T |
30165 |
caataatcacttatgacccataattgaaaagatgaagttattttttaattgaaaaaaggaatctatttcccttacctctaggtcttgaatcaactacctt |
30066 |
T |
|
| Q |
197 |
aagcttcaatctcccctctagttccaagaaccctagctttctctagcttcctcttcttt |
255 |
Q |
| |
|
||||||||||||||||| | || | | ||| |||||||| |||||||||||||||| |
|
|
| T |
30065 |
aagcttcaatctcccctttttctctcaaaccccaagctttctttagcttcctcttcttt |
30007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 9252898 - 9252963
Alignment:
| Q |
141 |
cttaattatgaaaatgatatatcccccttacctctaggtcttaaatccagtagcttaagcttcaat |
206 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||||||| ||| || ||||||| |||||||| |
|
|
| T |
9252898 |
cttaactatgaaaaggatatatcccccttacatctaggtcttgaattcactagcttaggcttcaat |
9252963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 9270638 - 9270701
Alignment:
| Q |
120 |
attgaaaatatgaag-ttatagcttaattatgaaaatgatatatcccccttacctctaggtctt |
182 |
Q |
| |
|
|||||||| |||||| || || |||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
9270638 |
attgaaaagatgaaggttgtaacttaattatgaaaaggatataccccccttacctctaggtctt |
9270701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 9199293 - 9199380
Alignment:
| Q |
120 |
attgaaaatatgaag-ttatagcttaattatgaaaatgatatatcccccttacctctaggtcttaaatccagtagcttaagcttcaat |
206 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||| |||| || ||||| ||||||||||||||||| || || ||||||| |||||||| |
|
|
| T |
9199293 |
attgaaaagatgaagattataacttaattataaaaaggagctatcctccttacctctaggtcttgaactcactagcttaggcttcaat |
9199380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 21910067 - 21909966
Alignment:
| Q |
106 |
cacttatgacccatattgaaaatatgaagttatagcttaatt-atgaaaatgatatatcccccttacctctaggtcttaaatccagtagcttaagcttca |
204 |
Q |
| |
|
||||||||||||||| | | || |||| ||||||||||||| |||||| || ||||||||||||||||||||||| |||| | |||||||| ||||| |
|
|
| T |
21910067 |
cacttatgacccataatcactatttgaaattatagcttaattgatgaaagaaatctatcccccttacctctaggtcttgaatctattagcttaaacttca |
21909968 |
T |
|
| Q |
205 |
at |
206 |
Q |
| |
|
|| |
|
|
| T |
21909967 |
at |
21909966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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