View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0181_low_9 (Length: 324)

Name: NF0181_low_9
Description: NF0181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0181_low_9
NF0181_low_9
[»] chr1 (17 HSPs)
chr1 (102-242)||(13161707-13161847)
chr1 (102-242)||(13130014-13130154)
chr1 (102-242)||(13094585-13094725)
chr1 (102-242)||(13007386-13007526)
chr1 (102-240)||(13101188-13101326)
chr1 (110-240)||(13070050-13070180)
chr1 (102-240)||(13204647-13204785)
chr1 (102-240)||(19727341-19727479)
chr1 (164-234)||(19279096-19279166)
chr1 (164-229)||(13065141-13065206)
chr1 (164-241)||(30368036-30368113)
chr1 (164-234)||(12963803-12963873)
chr1 (165-234)||(13271780-13271849)
chr1 (164-220)||(13080793-13080849)
chr1 (165-223)||(13244450-13244508)
chr1 (168-237)||(13086298-13086367)
chr1 (102-135)||(13244384-13244417)
[»] chr8 (1 HSPs)
chr8 (185-239)||(36668314-36668368)
[»] chr7 (1 HSPs)
chr7 (185-239)||(12164462-12164516)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 13161847 - 13161707
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161847 aagagatcaaagataattggctaacacaagaggataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 13161748  T
Q  202 aaccttaaggctttatcctcctataccttttgagcatatct 242  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  13161747 aaccttaaggctttatccacctataccttttgagcatatct 13161707  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 13130154 - 13130014
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||||||||||||||||||| |||||||||||| |||||||||||  |||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  13130154 aagagatcaaagataattggttaacacaagagggtaatcggattactttgaggcatgtggatcttgataagctagtatacctccatggagctatatgtga 13130055  T
Q  202 aaccttaaggctttatcctcctataccttttgagcatatct 242  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13130054 aaccttaaggctttatcctcctataccttttgagcatatct 13130014  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 13094725 - 13094585
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    ||||||||| |||||||||| |||||| ||||||| |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13094725 aagagatcagagataattggttaacacgagaggattatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtga 13094626  T
Q  202 aaccttaaggctttatcctcctataccttttgagcatatct 242  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  13094625 aaccttaaggctttatcctcctgtaccttttgagcatatct 13094585  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 13007526 - 13007386
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||| ||||||||||| ||||  ||||||||||| |||| || |   ||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  13007526 aagaaatcaaagataactggcccacacaagaggagaatcagactcctttgagagatgtggatcttgataagctagtgtacctccatggagctctatgtga 13007427  T
Q  202 aaccttaaggctttatcctcctataccttttgagcatatct 242  Q
    | || | ||||||||||||||| ||||||||||||||||||    
T  13007426 agccatgaggctttatcctcctgtaccttttgagcatatct 13007386  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 102 - 240
Target Start/End: Complemental strand, 13101326 - 13101188
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||| ||||||||||| || |  ||||||||||| |||| ||||   | ||| |||| |  ||||||||||||||| |||||||||||||||||||||||    
T  13101326 aagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtacctccatggagctatatgtga 13101227  T
Q  202 aaccttaaggctttatcctcctataccttttgagcatat 240  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  13101226 aaccttgaggctttatcctcctgtaccttttgagcatat 13101188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 13070050 - 13070180
Alignment:
Q  110 aaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaa 209  Q
    |||||||| ||||  ||||||||||| |||| || |   | ||| ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||| |    
T  13070050 aaagataactggcccacacaagaggagaatcagactccttggagagatgtggatcttgataatctagtgtaccttcatggagctatatgtgaaaccttga 13070149  T
Q  210 ggctttatcctcctataccttttgagcatat 240  Q
    | |||||||||||| ||||||||||||||||    
T  13070150 gactttatcctcctgtaccttttgagcatat 13070180  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 240
Target Start/End: Complemental strand, 13204785 - 13204647
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||| ||||||||||| || |  ||||||||||| |||| ||||   | ||| |||| |  ||||||||||||||| ||||| |||||||||||||||||    
T  13204785 aagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtaccttcatggagctatatgtga 13204686  T
Q  202 aaccttaaggctttatcctcctataccttttgagcatat 240  Q
    | |||| || |||||||||||| ||||||||||||||||    
T  13204685 agccttgagactttatcctcctgtaccttttgagcatat 13204647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 240
Target Start/End: Complemental strand, 19727479 - 19727341
Alignment:
Q  102 aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga 201  Q
    |||| ||||||||||| ||||  ||||||||||| || | || |   ||||| ||||||| ||||||||||||||| |||||||| |||| | ||||| |    
T  19727479 aagaaatcaaagataactggcccacacaagaggagaaccagactcctttgagagatgtggatcttgataagctagtgtacctccacggagatctatgtta 19727380  T
Q  202 aaccttaaggctttatcctcctataccttttgagcatat 240  Q
    | |||| || |||||||||||| ||||||||||||||||    
T  19727379 agccttgagactttatcctcctgtaccttttgagcatat 19727341  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 19279096 - 19279166
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttga 234  Q
    |||||||||||||| || || |||||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  19279096 cttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttga 19279166  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 13065141 - 13065206
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacct 229  Q
    |||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  13065141 cttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacct 13065206  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 30368036 - 30368113
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatc 241  Q
    |||||||||||||| |||||||||||||||||||||||| || | ||| | |||||| || |||||||||||| ||||    
T  30368036 cttgataagctagtctacctccatggagctatatgtgaatccatgaggttgtatcctactgtaccttttgagcttatc 30368113  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 12963803 - 12963873
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttga 234  Q
    ||||||||||| || || || ||||||||||| |||||| | ||||||||||||||||||||||| |||||    
T  12963803 cttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttga 12963873  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 13271849 - 13271780
Alignment:
Q  165 ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttga 234  Q
    ||||||||||  | ||||| |||| |||||||||||||||||| || ||||||||||||||||| |||||    
T  13271849 ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttga 13271780  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 13080793 - 13080849
Alignment:
Q  164 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcct 220  Q
    |||||||||||||| ||||| |||||||| ||||||||| |||||||||| ||||||    
T  13080793 cttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatcct 13080849  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 13244450 - 13244508
Alignment:
Q  165 ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 223  Q
    |||||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 13244508  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 13086367 - 13086298
Alignment:
Q  168 ataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagca 237  Q
    |||| ||||| ||||| |||||||||||||||||| | || ||||||||||||||| |||| ||| ||||    
T  13086367 ataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagca 13086298  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 13244384 - 13244417
Alignment:
Q  102 aagagatcaaagataattggctaacacaagagga 135  Q
    ||||||||||||||||||| ||||||||||||||    
T  13244384 aagagatcaaagataattgtctaacacaagagga 13244417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 36668368 - 36668314
Alignment:
Q  185 catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata 239  Q
    ||||||||| |||||||| |||||||||||||||| || ||||||||||||||||    
T  36668368 catggagctttatgtgaagccttaaggctttatccaccaataccttttgagcata 36668314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 12164516 - 12164462
Alignment:
Q  185 catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata 239  Q
    ||||||||| |||||||| |||| ||||||||||| || ||||||||||||||||    
T  12164516 catggagctttatgtgaagccttgaggctttatccgccgataccttttgagcata 12164462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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