View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0182_high_1 (Length: 432)

Name: NF0182_high_1
Description: NF0182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0182_high_1
NF0182_high_1
[»] chr4 (13 HSPs)
chr4 (30-419)||(36612684-36613073)
chr4 (131-387)||(35968797-35969053)
chr4 (215-382)||(20211229-20211396)
chr4 (130-387)||(36636290-36636547)
chr4 (130-382)||(36910035-36910287)
chr4 (215-384)||(28125370-28125538)
chr4 (215-384)||(29677047-29677217)
chr4 (282-392)||(36627553-36627663)
chr4 (266-375)||(38862637-38862748)
chr4 (334-382)||(55966197-55966245)
chr4 (45-90)||(35968711-35968756)
chr4 (130-174)||(18364685-18364729)
chr4 (130-174)||(36598196-36598240)
[»] chr5 (2 HSPs)
chr5 (53-365)||(19657708-19658020)
chr5 (53-365)||(19674547-19674859)
[»] chr1 (2 HSPs)
chr1 (136-381)||(42602238-42602481)
chr1 (53-90)||(42602527-42602564)
[»] chr6 (2 HSPs)
chr6 (130-382)||(33839645-33839897)
chr6 (322-387)||(33843560-33843625)
[»] chr8 (1 HSPs)
chr8 (325-380)||(35336425-35336480)
[»] chr3 (2 HSPs)
chr3 (130-178)||(25597390-25597438)
chr3 (130-178)||(25602186-25602234)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 30 - 419
Target Start/End: Complemental strand, 36613073 - 36612684
Alignment:
Q  30 ctattaaattttctagaacaatctttccaaaatctttgaattttccagcattgaccagcttaaatttaaacacatttatgttttgtggtggcgatgacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36613073 ctattaaattttctagaacaatctttccaaaatctttgaatttgccagcattgaccagcttaaatttaaacacatttatgttttgtggtggcgatgacaa 36612974  T
Q  130 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 229  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36612973 ttgtgttgaaccctcttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 36612874  T
Q  230 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36612873 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactcagagtctttgtacctttacttataccggtcatcctgatc 36612774  T
Q  330 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcagaaatatatttttgttgggaaaagcctgctatgcttc 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36612773 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgctgcagaaatatatttttgttgggaaaagcctgctatgcttc 36612684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 131 - 387
Target Start/End: Original strand, 35968797 - 35969053
Alignment:
Q  131 tgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagacac 230  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| || |  | |||   ||   |||||| |||| ||||| ||||||||| |||||||    
T  35968797 tgtgttgaccccttttccgcctttactaagttgaatagtttggtcctttacggttgtaagatagaggatgctcaaatcctcaagatatcaagtgagacac 35968896  T
Q  231 tagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatca 330  Q
    | ||  |||||||||||||| | | ||||| | | |||  | ||||| |||| | |||||| |||||||| |||||||||  |||||||  |||| ||||    
T  35968897 ttgtcgatttagctatgcatcataattcatctaatttttcccaaattgagttgtctactcctagtctttgcacctttactattaccggtattcctaatca 35968996  T
Q  331 gagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcagaaat 387  Q
    || |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  35968997 gaaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgatgcaaaaat 35969053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 20211396 - 20211229
Alignment:
Q  215 atatcaagcgagacactagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttata 314  Q
    ||||||||| ||||||| || | ||||||||||||| |   |||||  ||||||| ||||||| |||||| |  ||||||||||||||||||||||| ||    
T  20211396 atatcaagcaagacacttgtcattttagctatgcataatgattcatccgactttgccaaaattgagttatctggtccgagtctttgtacctttactttta 20211297  T
Q  315 ccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgca 382  Q
    |||||  ||||||||||| ||||||||| || |||||||||||||| ||||  |||||||||| ||||    
T  20211296 ccggtattcctgatcagaaaatatgtggaagcggtctttcttctgtgaaacatgtaaatattgctgca 20211229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 130 - 387
Target Start/End: Complemental strand, 36636547 - 36636290
Alignment:
Q  130 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 229  Q
    ||||| ||| |||||||  |||||| ||||||||| |||||||||||||  ||| |||    | ||||||||||||| ||||||||||||||| || ||     
T  36636547 ttgtgctgagccctttttggcctttcccaagttgactagtttggtcattcgtagttgtagggtaagggatgcacaaatcctcaggatatcaagtgaaacc 36636448  T
Q  230 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatc 329  Q
    || || |||||    |||| | |   |||| | |||||||  |||||| |||||| | |||| ||||||||||||||||||| ||| |||  ||||| ||    
T  36636447 cttgtcaattttaaaatgcgtaattattcagaagactttgcaaaaattgagttatgtgctccaagtctttgtacctttacttttactggtactcctgttc 36636348  T
Q  330 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcagaaat 387  Q
    ||| ||||||||||||||||||||||||||| |||| |||||| ||| | ||||||||    
T  36636347 agaaaatatgtgggagtggtctttcttctgtcaaacaagtaaagattaaagcagaaat 36636290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 382
Target Start/End: Original strand, 36910035 - 36910287
Alignment:
Q  130 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 229  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||  ||| ||||   | | |||||| |||| |||||  |||||||| ||||||    
T  36910035 ttgtgctgagccctttttcgcctttaccaagttgaatagtttggtcattagtagctgtgaggtaaaggatgctcaaatcctcaacatatcaagtgagaca 36910134  T
Q  230 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatc 329  Q
    || || ||||||||  |||| || | || |  |||||||| |||| |  |||||| | |||| ||||||||||||||||||| ||||||| | | |  ||    
T  36910135 cttgtcaatttagccctgcacgataatttacttgactttgtcaaattcaagttatctgctccaagtctttgtacctttacttttaccggtgaccttcttc 36910234  T
Q  330 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgca 382  Q
    ||| ||||| ||||||  |||| |||||| |||||| ||||||||| ||||||    
T  36910235 agaaaatatatgggagcagtctctcttctattaaacaagtaaatatcgatgca 36910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 215 - 384
Target Start/End: Original strand, 28125370 - 28125538
Alignment:
Q  215 atatcaagcgagacactagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttata 314  Q
    ||||||||||||||||| ||   ||||||||||||| |   |||||  ||||||| ||||||| ||| || |  ||||||||||||| ||||||||| ||    
T  28125370 atatcaagcgagacacttgtcgttttagctatgcataatgattcatccgactttgccaaaattgagt-atctggtccgagtctttgttcctttactttta 28125468  T
Q  315 ccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcaga 384  Q
    |||||  ||||||||||| ||||||||| ||  ||||||||||||| ||||  |||||||||| ||||||    
T  28125469 ccggtattcctgatcagaaaatatgtggaagcagtctttcttctgtgaaacatgtaaatattgctgcaga 28125538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 384
Target Start/End: Original strand, 29677047 - 29677217
Alignment:
Q  215 atatcaagcgagacactagtaaatttagctatgcat-gaaagttcatatgactttgacaaaattcagttatttactcc-gagtctttgtacctttactta 312  Q
    ||||||||||||||||| || ||||||| || |||| | |||| |||  |||||||  |||||| |||||| |||||| ||||||||||||| ||||||     
T  29677047 atatcaagcgagacacttgtcaatttagatacgcatagtaagt-catccgactttgcaaaaattgagttatctactcctgagtctttgtacccttacttt 29677145  T
Q  313 taccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcaga 384  Q
     || |||  ||||||||||  ||||||||| || |||||||||||||| ||||  |||||||||| ||||||    
T  29677146 cactggtagtcctgatcagcaaatatgtggaagcggtctttcttctgtgaaacatgtaaatattgctgcaga 29677217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 392
Target Start/End: Complemental strand, 36627663 - 36627553
Alignment:
Q  282 tatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgc 381  Q
    |||||||||| ||||||||||||||||  | |||||||   |||  ||| | |||||||||||| ||||||||||||||||||| ||||||||||| |||    
T  36627663 tatttactccaagtctttgtacctttaagtttaccggtataccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgc 36627564  T
Q  382 agaaatatatt 392  Q
    || ||| ||||    
T  36627563 agtaatgtatt 36627553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 38862748 - 38862637
Alignment:
Q  266 tttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaatatgtg--ggagtggtctttcttctgttaa 363  Q
    ||||| |||||| || ||| |||||| ||||| ||||||||||||| || ||||  |||| |||| | ||||||||  ||||||||||||||||||||||    
T  38862748 tttgagaaaattgagctatctactccaagtctatgtacctttacttttagcggtagtcctaatcatataatatgtgtgggagtggtctttcttctgttaa 38862649  T
Q  364 actagtaaatat 375  Q
    || |||||||||    
T  38862648 acgagtaaatat 38862637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 55966245 - 55966197
Alignment:
Q  334 aatatgtgggagtggtctttcttctgttaaactagtaaatattgatgca 382  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  55966245 aatatgtgggagtgctctttcttctgttaaacaagtaaatattggtgca 55966197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 35968711 - 35968756
Alignment:
Q  45 gaacaatctttccaaaatctttgaattttccagcattgaccagctt 90  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||    
T  35968711 gaacaatatttccaaaatatttgaatttgccagcattgaccagctt 35968756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 18364685 - 18364729
Alignment:
Q  130 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggt 174  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||    
T  18364685 ttgtgctgagcccttttccgcctttcccaagttgaatagtttggt 18364729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 36598240 - 36598196
Alignment:
Q  130 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggt 174  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||    
T  36598240 ttgtgctgagcccttttccgcctttcccaagttgaatagtttggt 36598196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 53 - 365
Target Start/End: Complemental strand, 19658020 - 19657708
Alignment:
Q  53 tttccaaaatctttgaattttccagcattgaccagcttaaatttaaacacatttatgttttgtggtggcgatgacaattgtgttgaacccttttccgcct 152  Q
    |||||||||||||||||||| ||| ||||||||| ||||||| ||||   |||||| ||| || | || ||  ||||||||| ||| || |||| || ||    
T  19658020 tttccaaaatctttgaatttgccatcattgaccaacttaaatctaaaagaatttatctttagttgcggtgaaaacaattgtgctgagccttttttcggct 19657921  T
Q  153 ttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagacactagtaaatttagctatgcatga 252  Q
    ||||||||||||||||||||||||||||| | |||   ||| |||||||| ||||||| | ||||||||| |||||||| ||||||||| |||||||  |    
T  19657920 ttaccaagttgaatagtttggtcattgattgttgtagtatttgggatgcaaaaaccctaaagatatcaagtgagacacttgtaaatttaactatgcacaa 19657821  T
Q  253 aagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaatatgtgggagtggtctt 352  Q
    || |  || | || ||||||||||| |||||| |||| | ||||||||||||||||||||||||| |  |  |  || |||||||||||||| |||||||    
T  19657820 aaatatattttacattgacaaaattgagttatctacttcaagtctttgtacctttacttataccgattgttttattccgagaatatgtgggactggtctt 19657721  T
Q  353 tcttctgttaaac 365  Q
     ||||||||||||    
T  19657720 gcttctgttaaac 19657708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 53 - 365
Target Start/End: Complemental strand, 19674859 - 19674547
Alignment:
Q  53 tttccaaaatctttgaattttccagcattgaccagcttaaatttaaacacatttatgttttgtggtggcgatgacaattgtgttgaacccttttccgcct 152  Q
    |||||||||||||||| ||| ||| ||||||||| ||||||| ||||   |||||| ||| || | || ||  ||||||||| ||| || |||| || ||    
T  19674859 tttccaaaatctttgagtttgccatcattgaccaacttaaatctaaaagaatttatctttagttgcggtgaaaacaattgtgctgagccttttttcggct 19674760  T
Q  153 ttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagacactagtaaatttagctatgcatga 252  Q
    ||||||||||||||||||||||||||||| | |||   ||| |||||||| ||||||| | ||||||||| |||||||| ||||||||| |||||||  |    
T  19674759 ttaccaagttgaatagtttggtcattgattgttgtagtatttgggatgcaaaaaccctaaagatatcaagtgagacacttgtaaatttaactatgcacaa 19674660  T
Q  253 aagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaatatgtgggagtggtctt 352  Q
    || |  || | || ||||||||||| |||||| |||| | ||||||||||||||||||||||||| |  |  |  || |||||||||||||| |||||||    
T  19674659 aaatatattttacattgacaaaattgagttatctacttcaagtctttgtacctttacttataccgattgttttattccgagaatatgtgggactggtctt 19674560  T
Q  353 tcttctgttaaac 365  Q
     ||||||||||||    
T  19674559 gcttctgttaaac 19674547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 381
Target Start/End: Complemental strand, 42602481 - 42602238
Alignment:
Q  136 tgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagacactagta 235  Q
    |||||||||||   ||||||||| |||||||||||||||||||   || ||| |  | |  |||||||||| ||||||||||||||| |||||||| ||     
T  42602481 tgaaccctttttgacctttaccaggttgaatagtttggtcattagcagttgtacggtaaaagatgcacaaatcctcaggatatcaagtgagacacttgtc 42602382  T
Q  236 aatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaa 335  Q
    ||||||||||||||| | | ||||| |  ||||  ||||||  |||||| | |||| || |||||| | ||||||   | |||   || |||||||| ||    
T  42602381 aatttagctatgcataatatttcatcttcctttaccaaaatcgagttatctgctccaagcctttgtgcatttactatcaacggcagtcttgatcagaaaa 42602282  T
Q  336 tatgtgggagtggtctttcttctgttaaactagtaaatattgatgc 381  Q
    |||||||||| ||||  |||||||||||||  ||||||||||||||    
T  42602281 tatgtgggagcggtc--tcttctgttaaacatgtaaatattgatgc 42602238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 42602564 - 42602527
Alignment:
Q  53 tttccaaaatctttgaattttccagcattgaccagctt 90  Q
    |||||||||||||||||||| || ||||||||||||||    
T  42602564 tttccaaaatctttgaatttgccggcattgaccagctt 42602527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 382
Target Start/End: Complemental strand, 33839897 - 33839645
Alignment:
Q  130 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 229  Q
    ||||| ||| |||||||| |||||||||||||||||||| ||| |||||  | | |||    ||| ||||||||||| |||| |||||||||| ||||||    
T  33839897 ttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagaca 33839798  T
Q  230 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatc 329  Q
    ||||  ||||||  | || || | | || ||   |||||||||||||  || ||  | |||||||||| || |||||||||| |   |||  |||| | |    
T  33839797 ctagacaatttatatttgtataagaatttattcaactttgacaaaatcgagctagctgctccgagtctctgcacctttactttttatggtactcctaaac 33839698  T
Q  330 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgca 382  Q
    ||| |||||||||||||||  ||||||| ||||||  |||||| |||||||||    
T  33839697 agaaaatatgtgggagtggattttcttccgttaaagaagtaaacattgatgca 33839645  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 33843625 - 33843560
Alignment:
Q  322 tcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcagaaat 387  Q
    ||||||||||| ||||| |||||||||  ||||||||||||||  |||||| ||||||||| ||||    
T  33843625 tcctgatcagaaaatatatgggagtggattttcttctgttaaagaagtaaacattgatgcaaaaat 33843560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 35336425 - 35336480
Alignment:
Q  325 tgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatg 380  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||    
T  35336425 tgatcagaaaatatgtgggagcggtctttcttctgttaaacaagtaaacattgatg 35336480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 25597390 - 25597438
Alignment:
Q  130 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcatt 178  Q
    ||||||||| ||||||| ||||||||  | |||||||||||||||||||    
T  25597390 ttgtgttgagccctttttcgcctttaaaatgttgaatagtttggtcatt 25597438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 25602186 - 25602234
Alignment:
Q  130 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcatt 178  Q
    |||||||||||||||||  |||||||  | |||||||||||||||||||    
T  25602186 ttgtgttgaaccctttttggcctttaaaatgttgaatagtttggtcatt 25602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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