View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0182_high_2 (Length: 390)
Name: NF0182_high_2
Description: NF0182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0182_high_2 |
 | |
|
| [»] scaffold0050 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0050 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 45224 - 45364
Alignment:
| Q |
97 |
atataacaactcaatctcagctcatgtatgatgattctgttgagatagttgcatgtattggtggaaagttgaaaaagtttagctctgttggattaggaat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
45224 |
atataacaactcaatctcagctcatgtatgatgattctgttgagatagtcgcatgtattgatggaaagtggaaaaagtttagctctgctggattaggaat |
45323 |
T |
|
| Q |
197 |
tttaggtggacatgttcccgatcttgaaattctgtcactat |
237 |
Q |
| |
|
||||| |||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
45324 |
tttagctggatatgttcccaatcttgaaattctatcactat |
45364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 46549 - 46606
Alignment:
| Q |
264 |
cctaacaaccaaactagattcttccgcatatagtcaatggtcaataataatgaaagat |
321 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
46549 |
cctaacaacaaaactaaattcttctgcatatagtcgatggttaataataatgaaagat |
46606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 237
Target Start/End: Original strand, 41922810 - 41922995
Alignment:
| Q |
80 |
taagtaaattgaaagtaatataacaactcaatctcagctcatgtatgatg-------attctgttgagatagttgcatgtattggtggaaagttgaaaa- |
171 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41922810 |
taagtaaactgaaagtaatagaacatctcaatctcagctcatgtatgatggatgatgattcagttgagatggttgcatgtattggtggaaagttgaaaag |
41922909 |
T |
|
| Q |
172 |
----------agt----------ttagctctgttggattaggaattttaggtggacatgttcccgatcttgaaattctgtcactat |
237 |
Q |
| |
|
||| ||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41922910 |
tctgaatctgagtggtacttgggttagctctgctggattagggattttagctggacatgttcccaatcttgaaattctgtcactat |
41922995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 34452682 - 34452730
Alignment:
| Q |
273 |
caaactagattcttccgcatatagtcaatggtcaataataatgaaagat |
321 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||| |||||| |||||| |
|
|
| T |
34452682 |
caaactaaattctttcccatatagtcaatggtcaaaaataataaaagat |
34452730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1970 times since January 2019
Visitors: 2201