View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0182_high_3 (Length: 283)
Name: NF0182_high_3
Description: NF0182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0182_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 32200144 - 32200406
Alignment:
| Q |
20 |
gacatcatcaacaatttacacaactttgaaacaattaacggctcattctccttataaatccgtttctcttcctccagaaactgaaggagatgatcactga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
32200144 |
gacatcatcaacaatttacacaactttgaaacaattaacggctcattctccttataaatccgtttctcttcctgcagaaactgaaggagatgatcgctga |
32200243 |
T |
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| Q |
120 |
cacggagaaatttcacaggttcggttttgggttttatacgatcatagtatacatcgaataaaaaaggattttgattcaaaaaggtatcaattttaacctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32200244 |
cacggagaaatttcacaggttcggttttgggttttatacgatcatagtatacatcgaataaaaaaggattttgattcaaaaaggtatcaattttaacctt |
32200343 |
T |
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| Q |
220 |
gagacgcatcctttggcggcgtttctcaagataacgtagagggatgacttgacctggttcatt |
282 |
Q |
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| T |
32200344 |
gagacgcatcctttggcggcgtttctcaagataacgtagagggatgacttgacctggttcatt |
32200406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 11338034 - 11337775
Alignment:
| Q |
20 |
gacatcatcaacaatttacacaactttgaaacaattaacggctcattctccttataaatccgtttctcttcctccagaaactgaaggagatgatcactga |
119 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
11338034 |
gacatcatcaacaatttacacaacttggaaacaattaacggttcattctccttataaattcgtttctcttcctccagaaactgaagaagatgatcgctga |
11337935 |
T |
|
| Q |
120 |
cacggagaaatttcacaggttcggttttgggttttatacgatcatagtatacatcgaataaaaaaggattttgattcaaaaaggtatcaattttaacctt |
219 |
Q |
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| T |
11337934 |
cacgaagaaatttaacgggcttggttttgggcttgatgcgatcatagtagacatcgaataaaaaagggttttgattcaaaaaggtgtcgattttaacctt |
11337835 |
T |
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| Q |
220 |
gagacgcatcctttggcggcgtttctcaagataacgtagagggatgacttgacctggttc |
279 |
Q |
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||| ||||||||||| |||||||| || || || |||| ||| || |||||||||||||| |
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| T |
11337834 |
gagtcgcatcctttgacggcgtttttcgaggtagcgtaaaggaataacttgacctggttc |
11337775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 11496053 - 11495794
Alignment:
| Q |
20 |
gacatcatcaacaatttacacaactttgaaacaattaacggctcattctccttataaatccgtttctcttcctccagaaactgaaggagatgatcactga |
119 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
11496053 |
gacatcatcaacaatttacacaacttggaaacaattaacggttcattctccttataaattcgtttctcttcctccagaaactgaagaagatgatcgctga |
11495954 |
T |
|
| Q |
120 |
cacggagaaatttcacaggttcggttttgggttttatacgatcatagtatacatcgaataaaaaaggattttgattcaaaaaggtatcaattttaacctt |
219 |
Q |
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|||| |||||||| || || | ||||||||| || || ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
11495953 |
cacgaagaaatttaacgggcttggttttgggcttgatgcgatcatagtagacatcgaataaaaaagggttttgattcaaaaaggtgtcgattttaacctt |
11495854 |
T |
|
| Q |
220 |
gagacgcatcctttggcggcgtttctcaagataacgtagagggatgacttgacctggttc |
279 |
Q |
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||| ||||||||||| |||||||| || || || |||| ||| || |||||||||||||| |
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| T |
11495853 |
gagtcgcatcctttgacggcgtttttcgaggtagcgtaaaggaataacttgacctggttc |
11495794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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