View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0182_high_4 (Length: 281)

Name: NF0182_high_4
Description: NF0182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0182_high_4
NF0182_high_4
[»] chr6 (12 HSPs)
chr6 (32-271)||(24196506-24196745)
chr6 (178-265)||(12517000-12517087)
chr6 (178-271)||(29641867-29641960)
chr6 (178-271)||(31512031-31512124)
chr6 (178-265)||(12519219-12519306)
chr6 (179-271)||(15333248-15333339)
chr6 (179-265)||(4220226-4220312)
chr6 (180-265)||(10187156-10187241)
chr6 (179-265)||(18343737-18343823)
chr6 (182-242)||(2202703-2202764)
chr6 (197-231)||(15877026-15877060)
chr6 (197-230)||(29965978-29966011)
[»] chr5 (20 HSPs)
chr5 (127-271)||(43449082-43449226)
chr5 (179-270)||(37372543-37372634)
chr5 (179-265)||(3689590-3689676)
chr5 (179-265)||(3877111-3877197)
chr5 (179-265)||(8429096-8429182)
chr5 (179-265)||(37260927-37261013)
chr5 (180-265)||(24630383-24630468)
chr5 (178-271)||(39882789-39882882)
chr5 (179-271)||(27880690-27880782)
chr5 (180-264)||(30347066-30347150)
chr5 (179-265)||(6088822-6088908)
chr5 (179-265)||(15033102-15033188)
chr5 (178-265)||(26832233-26832320)
chr5 (180-265)||(10024675-10024760)
chr5 (179-265)||(2261509-2261595)
chr5 (179-271)||(4051417-4051506)
chr5 (179-265)||(14193333-14193419)
chr5 (179-248)||(43524351-43524420)
chr5 (179-265)||(30313815-30313898)
chr5 (179-265)||(25543314-25543398)
[»] chr3 (20 HSPs)
chr3 (32-172)||(47696216-47696356)
chr3 (179-271)||(32416-32508)
chr3 (179-271)||(10038246-10038338)
chr3 (179-271)||(10969302-10969394)
chr3 (179-271)||(11368252-11368344)
chr3 (178-265)||(50409784-50409871)
chr3 (179-265)||(11361870-11361956)
chr3 (180-265)||(13529652-13529737)
chr3 (178-265)||(10110212-10110299)
chr3 (178-265)||(10231436-10231523)
chr3 (178-264)||(10000020-10000106)
chr3 (178-265)||(10235034-10235121)
chr3 (179-265)||(37801944-37802030)
chr3 (179-248)||(46912700-46912769)
chr3 (179-271)||(41763883-41763975)
chr3 (181-246)||(15329086-15329151)
chr3 (197-236)||(20777756-20777795)
chr3 (197-236)||(38356474-38356513)
chr3 (197-231)||(35685133-35685167)
chr3 (197-231)||(55368943-55368977)
[»] chr8 (12 HSPs)
chr8 (179-271)||(25219086-25219178)
chr8 (180-271)||(21114266-21114357)
chr8 (179-271)||(7781355-7781447)
chr8 (179-271)||(7821445-7821537)
chr8 (179-265)||(30306789-30306875)
chr8 (179-271)||(31979048-31979140)
chr8 (179-265)||(14713904-14713989)
chr8 (178-256)||(25209553-25209631)
chr8 (179-271)||(33861901-33861993)
chr8 (181-246)||(14767194-14767259)
chr8 (197-231)||(17886246-17886280)
chr8 (197-231)||(25089468-25089502)
[»] chr4 (10 HSPs)
chr4 (179-271)||(35855513-35855605)
chr4 (180-271)||(55559560-55559651)
chr4 (179-265)||(37531926-37532012)
chr4 (178-271)||(49709779-49709872)
chr4 (179-271)||(1860283-1860375)
chr4 (178-265)||(787493-787580)
chr4 (178-271)||(49787349-49787441)
chr4 (179-271)||(31921079-31921171)
chr4 (179-255)||(38517718-38517794)
chr4 (199-231)||(13916459-13916491)
[»] chr2 (13 HSPs)
chr2 (179-271)||(21394976-21395068)
chr2 (179-265)||(27508986-27509072)
chr2 (180-265)||(24269592-24269677)
chr2 (178-271)||(41920694-41920787)
chr2 (179-265)||(17684350-17684436)
chr2 (178-271)||(28666694-28666786)
chr2 (178-271)||(37825528-37825620)
chr2 (179-265)||(2867577-2867663)
chr2 (179-265)||(27192101-27192187)
chr2 (179-265)||(27841915-27842001)
chr2 (179-265)||(35609297-35609383)
chr2 (179-237)||(24245492-24245550)
chr2 (197-230)||(3571845-3571878)
[»] scaffold0073 (2 HSPs)
scaffold0073 (178-271)||(31540-31633)
scaffold0073 (179-271)||(19063-19155)
[»] scaffold0029 (1 HSPs)
scaffold0029 (179-271)||(132396-132488)
[»] scaffold0002 (1 HSPs)
scaffold0002 (179-271)||(310213-310305)
[»] chr1 (13 HSPs)
chr1 (179-271)||(37390666-37390758)
chr1 (179-265)||(28961686-28961772)
chr1 (180-265)||(52500281-52500366)
chr1 (178-265)||(18148300-18148387)
chr1 (179-271)||(16041631-16041723)
chr1 (179-271)||(48775856-48775948)
chr1 (178-265)||(2328782-2328868)
chr1 (179-253)||(6311514-6311588)
chr1 (179-271)||(25074374-25074463)
chr1 (179-265)||(36206828-36206913)
chr1 (179-265)||(48238998-48239085)
chr1 (197-236)||(42032100-42032139)
chr1 (197-229)||(1364563-1364595)
[»] scaffold0262 (1 HSPs)
scaffold0262 (178-265)||(18618-18705)
[»] scaffold1139 (1 HSPs)
scaffold1139 (179-265)||(609-695)
[»] chr7 (9 HSPs)
chr7 (180-265)||(42231696-42231781)
chr7 (179-274)||(7036324-7036418)
chr7 (180-265)||(9001667-9001752)
chr7 (178-265)||(5829075-5829162)
chr7 (178-265)||(21070582-21070669)
chr7 (178-271)||(12786500-12786592)
chr7 (197-231)||(12983007-12983041)
chr7 (197-231)||(18292589-18292623)
chr7 (197-231)||(26368005-26368039)
[»] scaffold0003 (2 HSPs)
scaffold0003 (179-265)||(165142-165228)
scaffold0003 (179-264)||(182424-182509)
[»] scaffold0550 (1 HSPs)
scaffold0550 (179-271)||(1093-1185)
[»] scaffold1424 (1 HSPs)
scaffold1424 (178-265)||(1296-1383)
[»] scaffold0025 (1 HSPs)
scaffold0025 (179-265)||(16297-16383)
[»] scaffold0012 (1 HSPs)
scaffold0012 (179-265)||(97345-97431)
[»] scaffold0022 (1 HSPs)
scaffold0022 (179-265)||(125841-125927)
[»] scaffold0134 (1 HSPs)
scaffold0134 (176-265)||(5777-5866)
[»] scaffold0118 (1 HSPs)
scaffold0118 (180-265)||(29156-29241)
[»] scaffold0090 (1 HSPs)
scaffold0090 (178-271)||(49458-49550)
[»] scaffold0888 (1 HSPs)
scaffold0888 (180-264)||(424-508)
[»] scaffold0017 (1 HSPs)
scaffold0017 (178-265)||(186171-186256)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 24196745 - 24196506
Alignment:
Q  32 ttgaacggaagacgaagctgaacttttttgttagtgaatattttgttggtccttttcttccatatttcgttttctcataacacannnnnnngtttggtgc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  24196745 ttgaacggaagacgaagctgaacttttttgttagtgaatattttgttggtccttttcttccatatttcgttttctcataacacatttttttgtttggtgc 24196646  T
Q  132 tcatatgtttttactttttaggatgtgtctactacgaactcctaacacaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24196645 tcatatgtttttactttttaggatgtgtctactacgaactcctaacacaatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtca 24196546  T
Q  232 atctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||| ||||||| |||||||| |||||    
T  24196545 atctttatctcgagtgggggtttatcttcctaagcctgtg 24196506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 12517087 - 12517000
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  12517087 acaatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaag 12517000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 29641867 - 29641960
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  29641867 acaatttccattgacgctttgttttgcaatgacaataaataaaagccagggtcaatctttatttcgagtgggggtttatcttcctaagcctgtg 29641960  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 31512031 - 31512124
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  31512031 acaatttccattgacgctttgttttgcaatgacaataaataaaagccagggtcaatctttatttcgagtgggggtttatcttcctaagcctgtg 31512124  T

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Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 12519306 - 12519219
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  12519306 acaatttccattgacgctttgttttgcaatgacaataaataaaagtcaaggtcaatctttatctcgagtgggagtttatattcctaag 12519219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 15333339 - 15333248
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  15333339 caatttccattgacgctttgttttgaaataacaataaataaaagccagggtcaatctttatctcgagtgg-ggtttatcttcctaagcctgtg 15333248  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 4220226 - 4220312
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||    
T  4220226 caatttccattgacgctttgttttgcaatgacaataaaaaaaagttagggtcaatctttatctcgagtgggagtttatcttcctaag 4220312  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 10187241 - 10187156
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  10187241 aatttccattgacgttttgttttgcaatgacgataaataaaagtcaaggtcaatctttatctcgagtgggagtttatcttcctaag 10187156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 18343823 - 18343737
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||| |||||  |||||| ||||||||    
T  18343823 caatttccattgacactttgttttgcaattacaataaaaaaaagttagggtcaatctttatctcaagtgggagtttatcttcctaag 18343737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 2202703 - 2202764
Alignment:
Q  182 tttccattgacgctttgttttgcaa-tcacaataaataaaagtcagggtcaatctttatctc 242  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  2202703 tttccattgacgctttgttttgcaaatgacaataaataaaagtcagggtcaatctttatctc 2202764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 15877060 - 15877026
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||||| |||||||||||||||||||||||    
T  15877060 tgttttgcaatgacaataaataaaagtcagggtca 15877026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 29966011 - 29965978
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtc 230  Q
    ||||||||||| ||||||||||||||||||||||    
T  29966011 tgttttgcaatgacaataaataaaagtcagggtc 29965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 43449226 - 43449082
Alignment:
Q  127 ggtgctcatatgtttttactttttaggatgtgtctactacgaactcctaacacaatttccattgacgctttgttttgcaatcacaataaataaaagtcag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  43449226 ggtgctcatatgtttttactttttaggatgtgtctactacgaactcctaacacaatttctattgacgctttgttttgcaatgacaataaataaaagtcag 43449127  T
Q  227 ggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  43449126 ggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 43449082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 37372634 - 37372543
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgt 270  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  37372634 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaagcctgt 37372543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 3689676 - 3689590
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  3689676 caatttccattgacgctttgttttgcaatgacaataaataaaagtcaaggtcaatctttatctcgagtgggggtttatcttcctaag 3689590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 3877111 - 3877197
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  3877111 caatttccattgacgctttgttttgcaatgacaataaataaaagtcaaggtcaatctttatctcgagtgggggtttatcttcctaag 3877197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 8429096 - 8429182
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  8429096 caatttccattgacgctttgttttgcaatgacaataaataaaagacagggtcaatctttatctcgagtgggggtttatcttcctaag 8429182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 37261013 - 37260927
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  37261013 caatttccatcgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaag 37260927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 24630383 - 24630468
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  24630383 aatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 24630468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 39882882 - 39882789
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |||| |||||    
T  39882882 acaatttccattgacgctttgttttgcaatgacaataaataaaagccagggtcaatctttatctcgagtgggggtttatcttcataagcctgtg 39882789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 27880782 - 27880690
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||| |||||    
T  27880782 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagcgtcaatctttatctcgagtggggttttatcttcctaagcctgtg 27880690  T

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Target: chr5; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 30347066 - 30347150
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaa 264  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  30347066 aatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaa 30347150  T

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Target: chr5; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 6088908 - 6088822
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||    
T  6088908 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaacctttatctcgagtgggagtttatattcctaag 6088822  T

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Target: chr5; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 15033102 - 15033188
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  15033102 caatttccattgaggctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 15033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 26832320 - 26832233
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  26832320 acaatttccattgacgttttattttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtggcagtttatcttcctaag 26832233  T

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Target: chr5; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 10024760 - 10024675
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||    
T  10024760 aatttctattgacgctttgttttgcaatgacaataaataaaagtcaggttcaatctttatctcgagtgggagtttatcttcctaag 10024675  T

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Target: chr5; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 2261509 - 2261595
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||    
T  2261509 caatttccattgatgctttgttttgcaacgacaataaataaaagtcagggtcaatctttatctcaagtgggagtttatcttcctaag 2261595  T

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Target: chr5; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 4051506 - 4051417
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||| ||||||||||||||   ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  4051506 caatttccattgatgctttgttttgcaa---caatatataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 4051417  T

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Target: chr5; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 14193333 - 14193419
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||  |||||| ||||||||    
T  14193333 caatttccattgacattttgttttgcaatgacaataaataaaagtcagggtcaatgtttatcttgagtgggagtttatcttcctaag 14193419  T

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Target: chr5; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 43524351 - 43524420
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtgg 248  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  43524351 caatttcccttaacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatcccgagtgg 43524420  T

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Target: chr5; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 30313898 - 30313815
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||| |||||||||||||||||| ||   ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  30313898 caattttcattgacgctttgttttgtaa---caataaataaaagccagggtcaatctttatctcgagtgggggtttatcttcctaag 30313815  T

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Target: chr5; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 25543314 - 25543398
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||  | ||||||||||||||  ||||||||||||||||||||||||  |||||| | ||||||    
T  25543314 caatttccattgacgctttgttttgcggtgacaataaataaaag--agggtcaatctttatctcgagtgggagtttatatccctaag 25543398  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 47696356 - 47696216
Alignment:
Q  32 ttgaacggaagacgaagctgaacttttttgttagtgaatattttgttggtccttttcttccatatttcgttttctcataacacannnnnnngtttggtgc 131  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||       || || |||    
T  47696356 ttgaacggaagatgaagctgaatttttttgttagtgaatattttgttgttccttttcttccatattttgttttctcataacacatttttttgtctgatgc 47696257  T
Q  132 tcatatgtttttactttttaggatgtgtctactacgaactc 172  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  47696256 tcatatgtttttactttttaggatgtgtcaaatacgaactc 47696216  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 32508 - 32416
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  32508 caatttccattgacgctttgttttgcaatgacaataaataaaagccagggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 32416  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 10038338 - 10038246
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  10038338 caatttccattgacgctttgttttgcaatgacaatagataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 10038246  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 10969302 - 10969394
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||| |||||    
T  10969302 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaagcctgtg 10969394  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 11368344 - 11368252
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||||||    
T  11368344 caatttccattgacgctttgttttgcaatgacaataaataaaagccagagtcaatctttatctcgagtgggggtttatcttcttaagtctgtg 11368252  T

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Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 50409871 - 50409784
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||    
T  50409871 acaatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagattatcttcctaag 50409784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 11361956 - 11361870
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||    
T  11361956 caatttccattgacgctttgttttgcaatgacaataaataaaagtcaaggtcaatctttatctcaagtgggggtttatcttcctaag 11361870  T

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Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 13529737 - 13529652
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||    
T  13529737 aatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgactgggagtttatcttcctaag 13529652  T

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Target: chr3; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 10110299 - 10110212
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  10110299 acaatttccattgacgttttattttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 10110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 10231523 - 10231436
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  10231523 acaatttccattgacgttttattttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtggcagtttatcttcctaag 10231436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 10000106 - 10000020
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaa 264  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||   |||||| |||||||    
T  10000106 acaatttccattgacgttttattttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgtgagtttatcttcctaa 10000020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 10235121 - 10235034
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||| ||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  10235121 acaatttccatttacgttttattttgcaatgacaataaataaaagtcaaggtcaatctttatctcgagtgggagtttatcttcctaag 10235034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 37801944 - 37802030
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||| |||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||  |||||| ||||||||    
T  37801944 caattttcattgacgctttgttttgcaatgacaataaaaaaaagttagggtaaatctttatctcgagtgggagtttatcttcctaag 37802030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 46912769 - 46912700
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtgg 248  Q
    |||||||||| |||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46912769 caatttccatcgacagtttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgg 46912700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 41763883 - 41763975
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||  |||||||||||| |||||| |||||||| |||||||||||||||||| ||||| ||||||| ||| |||| |||||    
T  41763883 caatttccattgacgtgttgttttgcaatgacaatacataaaagtgagggtcaatctttatctcaagtgggggtttatcttcttaagcctgtg 41763975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 15329086 - 15329151
Alignment:
Q  181 atttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagt 246  Q
    |||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  15329086 atttccattgacacttttgtttgcaatgacaataaataaaagtcagggtcaatctttatcttgagt 15329151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 20777795 - 20777756
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtcaatctt 236  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  20777795 tgttttgcaatgacaataaataaaagtcagggtcagtctt 20777756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 38356474 - 38356513
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtcaatctt 236  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  38356474 tgttttgcaatgacaataaataaaagtcagggtcagtctt 38356513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 35685167 - 35685133
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||||| |||||||||||||||||||||||    
T  35685167 tgttttgcaatgacaataaataaaagtcagggtca 35685133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 55368977 - 55368943
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||||| |||||||||||||||||||||||    
T  55368977 tgttttgcaatgacaataaataaaagtcagggtca 55368943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 25219086 - 25219178
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  25219086 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 25219178  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 21114266 - 21114357
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  21114266 aatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaagtctgtg 21114357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 7781447 - 7781355
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7781447 caatttccattgacgctttgttttgcaatgacaataaataaaagctagggtcaatctttatctcgagtgggggtttatcttcctaagtctgtg 7781355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 7821537 - 7821445
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7821537 caatttccattgacgctttgttttgcaatgacaataaataaaagctagggtcaatctttatctcgagtgggggtttatcttcctaagtctgtg 7821445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 30306875 - 30306789
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  30306875 caatttccattgacactttgttttgcaatgacaataaataaaagccagggtcaatctttatctcgagtgggggtttatcttcctaag 30306789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 31979048 - 31979140
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  31979048 caatttccattgacgctttgttttacaatgacaataaataaaaaccagggtcaatctttatctcgagtgggggtttatcttcttaagtctgtg 31979140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 14713989 - 14713904
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||    
T  14713989 caatttccattgacgctttgttttgcaatgacaataaataaaattcagggtcaatctttatctcgagtgg-gatttatcttcctaag 14713904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 25209553 - 25209631
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttat 256  Q
    |||||||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||| |||||||    
T  25209553 acaatttccattgacgctttgttttgcaatgataataaataaaagccagggtcagtctttatctcgagtgggggtttat 25209631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 33861901 - 33861993
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||  |||||||||||| |||||| |||||||| |||||||||||||||||| ||||| ||||||| ||| |||| |||||    
T  33861901 caatttccattgacgtgttgttttgcaatgacaatacataaaagtgagggtcaatctttatctcaagtgggggtttatcttcttaagcctgtg 33861993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 14767259 - 14767194
Alignment:
Q  181 atttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagt 246  Q
    |||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  14767259 atttccattgacacttttgtttgcaatgacaataaataaaagtcagggtcaatctttatcttgagt 14767194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 17886280 - 17886246
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||||| |||||||||||||||||||||||    
T  17886280 tgttttgcaatgacaataaataaaagtcagggtca 17886246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 25089468 - 25089502
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||||| |||||||||||||||||||||||    
T  25089468 tgttttgcaatgacaataaataaaagtcagggtca 25089502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 35855605 - 35855513
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  35855605 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 35855513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 55559560 - 55559651
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  55559560 aatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttattttcctaagcctgtg 55559651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 37531926 - 37532012
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  37531926 caatttccattgacactttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtggaagtttatcttcctaag 37532012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 49709872 - 49709779
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| |||||    
T  49709872 acaatttccattgacgctttgttttgcaatgtcaataaataaaagtcaaggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 49709779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 1860375 - 1860283
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| ||||| ||||||| |||||||| |||||    
T  1860375 caatttccattgacgctttgttttgcaatgacaataaataaaagctagggtcaatctttatctcaagtgggggtttatcttcctaagcctgtg 1860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 787580 - 787493
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||    
T  787580 acaatttccattgacactttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcaagtgggagtttatcttcctaag 787493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 49787349 - 49787441
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||| ||||||| |||||||| |||||    
T  49787349 acaatttccattgacgctttgttttgcaatgacaataaataaaagcca-ggtcaatctttatctcgggtgggggtttatcttcctaagcctgtg 49787441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 31921171 - 31921079
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||  |||||||||||| |||||| |||||||| |||||||||||||||||| ||||| ||||||| ||| |||| |||||    
T  31921171 caatttccattgacgtgttgttttgcaatgacaatacataaaagtgagggtcaatctttatctcaagtgggggtttatcttcttaagcctgtg 31921079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 38517794 - 38517718
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggttta 255  Q
    |||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||| || ||||| ||||    
T  38517794 caatttcctttgacgctttgttttgcaatgacaataaataaaagccaaggtcaatctttatcttgaatggagtttta 38517718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 13916491 - 13916459
Alignment:
Q  199 ttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||| |||||||||||||||||||||||    
T  13916491 ttttgcaatgacaataaataaaagtcagggtca 13916459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 21395068 - 21394976
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  21395068 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 21394976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 27509072 - 27508986
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  27509072 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatattcctaag 27508986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 24269592 - 24269677
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  24269592 aatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 24269677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 41920694 - 41920787
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| |||||    
T  41920694 acaatttccattgacgctttgttttgcaatgacaataaataaaagccagggtcaatctttatctcgggtgggggtttatcttcctaagcctgtg 41920787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 17684350 - 17684436
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  17684350 caatttccattgacgttttgttttgcaatgacgataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 17684436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 28666694 - 28666786
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||| ||||||| |||||||| |||||    
T  28666694 acaatttccattgacgctttgttttgcaatgacaataaataaaag-ctaggtcaatctttatctcgggtgggggtttatcttcctaagcctgtg 28666786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 37825528 - 37825620
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||| ||||||| |||||||| |||||    
T  37825528 acaatttccattgacgctttgttttgcaatgacaataaataaaag-ctaggtcaatctttatctcgggtgggggtttatcttcctaagcctgtg 37825620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 2867577 - 2867663
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||||||||| |||||  |||||| ||||||||    
T  2867577 caatttccattgacgctttgttttgcaatgacaataaaaaaaagttcgggtcaatctttatctcaagtgggagtttatcttcctaag 2867663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 27192187 - 27192101
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||| |||||||||||||||||| ||||| || |||||| ||||||||||||||||||||||||  |||||| ||||||||    
T  27192187 caatttccatcgacgctttgttttgcaatgacaatgaaaaaaagttagggtcaatctttatctcgagtgggagtttatcttcctaag 27192101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 27842001 - 27841915
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||| |||||||||||||||||| ||||| || |||||| ||||||||||||||||||||||||  |||||| ||||||||    
T  27842001 caatttccatcgacgctttgttttgcaatgacaatgaaaaaaagttagggtcaatctttatctcgagtgggagtttatcttcctaag 27841915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 35609383 - 35609297
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||  |||||| ||||||||    
T  35609383 caatttccattgacattttgttttgcaatgacaataaataaaagtcaaggtcaatgtttatctcgagtgggagtttatcttcctaag 35609297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 24245550 - 24245492
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatcttt 237  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  24245550 caatttccattgacgctttgttttgcaatgacaataaataaaagttagggtcaatcttt 24245492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 3571845 - 3571878
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtc 230  Q
    ||||||||||| ||||||||||||||||||||||    
T  3571845 tgttttgcaatgacaataaataaaagtcagggtc 3571878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 31633 - 31540
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  31633 acaatttccattgacgctttgttttgcaatgacaataaataaaagccagggtcaatctttatctcgagtggcggtttatcttcctaagcctgtg 31540  T

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Target: scaffold0073; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 19155 - 19063
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  19155 caatttccattgacgctttgttttacaatgacaataaataaaaaccagggtcaatctttatctcgagtgggggtttatcttcttaagtctgtg 19063  T

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Target: scaffold0029 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 132396 - 132488
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||    
T  132396 caatttccattgacgctttgttttgcaatgacaataaataaaagtcaggatcaatctttatctcgagtgggggtttatcttcctaagcctgtg 132488  T

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Target: scaffold0002 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 310213 - 310305
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||    
T  310213 caatttccattgacgctttgttttgcaatgacaataaataaaagtcaggatcaatctttatctcgagtgggggtttatcttcctaagcctgtg 310305  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 37390666 - 37390758
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  37390666 caatttccattgacgctttgttttgcaatgacaataaataaaagccagggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 37390758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 28961772 - 28961686
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  28961772 caatttccattgacactttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtggaagtttatcttcctaag 28961686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 52500366 - 52500281
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  52500366 aatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 52500281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 18148387 - 18148300
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||  |||||| ||||||||    
T  18148387 acaatttccattgacgctttgttttgcaatgacaataaataaaagtcagtgtcaatctttatctcgagtgggagtttatcttcctaag 18148300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 16041723 - 16041631
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||| ||| |||| |||||    
T  16041723 caatttccattgacgctttgttttgcaatgacaataaataaaagccatggtcaatctttatctcgagtgggggtttatcttcataagcctgtg 16041631  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 48775856 - 48775948
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  || ||||||||||||||||||||| ||||||| |||||||| |||||    
T  48775856 caatttccattgacgctttgttttgcaatgacaataaataaaagcgagagtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 48775948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 2328868 - 2328782
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||    
T  2328868 acaatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttacctcgagtgg-gatttatcttcctaag 2328782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 6311514 - 6311588
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtt 253  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  6311514 caatttccattgacgctttgttttgcaatgaaaataaataaaagtcagggtcaatctttatctcgagtgggggtt 6311588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 25074374 - 25074463
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    ||||||||||||| ||||||||||||||   ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  25074374 caatttccattgatgctttgttttgcaa---caatatataaaagtcagggtcaatctttatctcgagtgggggtttatcttcctaagcctgtg 25074463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 36206913 - 36206828
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||| |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||    
T  36206913 caattttcattgacgctttgttttgcaacgacaataaataaaagttagggtcaatctttatctcgagt-gagatttatcttcctaag 36206828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 48238998 - 48239085
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaa-gtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||| ||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||  |||||| ||||||||    
T  48238998 caatttcgattgacgctttgttttgcaatgacaataaaaaaaaagttagggtcaatctttatctcgagtgggagtttatcttcctaag 48239085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 42032139 - 42032100
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtcaatctt 236  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  42032139 tgttttgcaatgacaataaataaaagtcagggtcagtctt 42032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 1364563 - 1364595
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggt 229  Q
    ||||||||||| |||||||||||||||||||||    
T  1364563 tgttttgcaatgacaataaataaaagtcagggt 1364595  T

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Target: scaffold0262 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 18705 - 18618
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  18705 acaatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 18618  T

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Target: scaffold1139 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 695 - 609
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  695 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 42231781 - 42231696
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  42231781 aatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 42231696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 7036418 - 7036324
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtgctc 274  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||    
T  7036418 caatttccactgacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgg-gggttatcttcctaagcctgtgctc 7036324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 9001667 - 9001752
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  9001667 aatttccattgacgctttattttgcaatgacaataaataaaagccagggtcaatctttatctcgagtgggggtttatcttcctaag 9001752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 5829075 - 5829162
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||  |||||| ||||||||    
T  5829075 acaatttccattgacgctttgttttgcaatgacaataaataaaagtccgggtcaatctctatctcgagtgggagtttatcttcctaag 5829162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 21070582 - 21070669
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  21070582 acaatttccattgtcgctttattttgcaatgacaataaataaaagtcagggtcaatctttatctcgagtgggagtttatcttcctaag 21070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 12786500 - 12786592
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||| ||||||| |||||||| |||||    
T  12786500 acaatttccattgacgctttgttttgcaatgacaataaataaaag-ctaggtcaatctttatctcgggtgggggtttatcttcctaagcctgtg 12786592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 12983041 - 12983007
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||||| |||||||||||||||||||||||    
T  12983041 tgttttgcaatgacaataaataaaagtcagggtca 12983007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 18292589 - 18292623
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||||| |||||||||||||||||||||||    
T  18292589 tgttttgcaatgacaataaataaaagtcagggtca 18292623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 26368005 - 26368039
Alignment:
Q  197 tgttttgcaatcacaataaataaaagtcagggtca 231  Q
    ||||||||||| |||||||||||||||||||||||    
T  26368005 tgttttgcaatgacaataaataaaagtcagggtca 26368039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 165228 - 165142
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||    
T  165228 caatttccattgacgctttgttttgcaatgacaataaataaaagtcaaggtcaatctttatctcaagtgggggtttatcttcctaag 165142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 182509 - 182424
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaa 264  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  182509 caatttgcattgacgctttgttttgcaatgataataaataaaagtcaaggtcaatctttatctcgagtgggggtttatcttcctaa 182424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 1093 - 1185
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||    
T  1093 caatttccattgacactttgttttacaatgacaataaataaaagtcagggtcaatctttatctcgagtgggggtttatcttcttaagtttgtg 1185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 1383 - 1296
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||  |||||| ||||||||    
T  1383 acaatttccatcgacgctttgttttgcaatgacaataaataaaagtcagggtcaatttttatctcgagtgggagtttatcttcctaag 1296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 16383 - 16297
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||  |||||| ||||||||    
T  16383 caatttccattgacgctttgttttgcaatgacaatgaataaaagtcagggtcaatatttatctcgagtgggagtttatcttcctaag 16297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 97345 - 97431
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||   ||||| ||||||||    
T  97345 caatttccattgacgctttgttttgcaatgacaataaataaaagtcagggtcaatttttatctcgagtgggattttatcttcctaag 97431  T

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Target: scaffold0022 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 125927 - 125841
Alignment:
Q  179 caatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||||    
T  125927 caattttcattaacgctttgttttgcaatgacaataaataaaagtcagggtcaatctttatcttgagtgggagtttatcttcctaag 125841  T

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Target: scaffold0134 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 5777 - 5866
Alignment:
Q  176 acacaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||   |||||| ||||||||    
T  5777 acacaatttccattgacgctttgttttgcaatgacaataaataaaagttaggctcaaactttatctcgagtgagagtttatcttcctaag 5866  T

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Target: scaffold0118 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 29156 - 29241
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||   |||||| ||||||||    
T  29156 aatttccattgacgttttgttttgcaatgacaataaataaaagtcagggtcaatatttatctcgagtgtgagtttatcttcctaag 29241  T

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Target: scaffold0090 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 49458 - 49550
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaagtctgtg 271  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||| ||||||| |||||||| |||||    
T  49458 acaatttccattgacgctttgttttgcaatgacaataaataaaag-ctaggtcaatctttatctcgggtgggggtttatcttcctaagcctgtg 49550  T

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Target: scaffold0888 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 424 - 508
Alignment:
Q  180 aatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaa 264  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||  |||||| |||||||    
T  424 aatttcctttgacgcttttttttgcaatgacaataaataaaagtcagagtcaatctttatctcaagtgggagtttatcttcctaa 508  T

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Target: scaffold0017 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 186256 - 186171
Alignment:
Q  178 acaatttccattgacgctttgttttgcaatcacaataaataaaagtcagggtcaatctttatctcgagtggaggtttattttcctaag 265  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||  |||||||||||||||||| |||||  |||||| | ||||||    
T  186256 acaatttccattgatgctttgttttacaatgacaataaataaaag--agggtcaatctttatctcaagtgggagtttatctacctaag 186171  T

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