View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0182_low_11 (Length: 259)
Name: NF0182_low_11
Description: NF0182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0182_low_11 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 32200664 - 32200435
Alignment:
| Q |
30 |
tgtacgacttatgtattagtcaaaaatgacaatgttatacgactaacgtaattctttcctctagatcaagacatgttctccaagacaaaaattcaaactt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32200664 |
tgtacgacttatgtattagtcaaaaatgacaatgttatacgactaacgtaattctttcctctagctcaagacatgttctccaagacaaaaattcaaactt |
32200565 |
T |
|
| Q |
130 |
ccttctgctactacctcaacaacaatctcaacattcacgttcacacaagacttatatccagtctcaaagtagtatggcgcaaggaccaatcacttgacca |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32200564 |
tcttctgctactacctcaacaacaatctcaacattcacgttcacacaagacttatatccagtctcaaagtagtatggcgcaaggaccaatcacttgacca |
32200465 |
T |
|
| Q |
230 |
agctatagaacaagataaacgcttcaagca |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32200464 |
agctatagaacaagataaacgcttcaagca |
32200435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 97 - 256
Target Start/End: Original strand, 11337581 - 11337740
Alignment:
| Q |
97 |
aagacatgttctccaagacaaaaattcaaacttccttctgctactacctcaacaacaatctcaacattcacgttcacacaagacttatatccagtctcaa |
196 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||| |
|
|
| T |
11337581 |
aagacatgttctccaagaccaaaatcaacacttttttctgctactacctcaacaacaatttcaacctttacaatcacacaagatctatatccagtctcaa |
11337680 |
T |
|
| Q |
197 |
agtagtatggcgcaaggaccaatcacttgaccaagctatagaacaagataaacgcttcaa |
256 |
Q |
| |
|
||| |||||||||||||| | |||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
11337681 |
agttgtatggcgcaaggatccatcactagaccaagccatagagcaagataaacgcttcaa |
11337740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 97 - 256
Target Start/End: Original strand, 11495600 - 11495759
Alignment:
| Q |
97 |
aagacatgttctccaagacaaaaattcaaacttccttctgctactacctcaacaacaatctcaacattcacgttcacacaagacttatatccagtctcaa |
196 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||| |
|
|
| T |
11495600 |
aagacatgttctccaagaccaaaatcaacacttttttctgctactacctcaacaacaatttcaacctttacaatcacacaagatctatatccagtctcaa |
11495699 |
T |
|
| Q |
197 |
agtagtatggcgcaaggaccaatcacttgaccaagctatagaacaagataaacgcttcaa |
256 |
Q |
| |
|
||| |||||||||||||| | |||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
11495700 |
agttgtatggcgcaaggatccatcactagaccaagccatagagcaagataaacgcttcaa |
11495759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1944 times since January 2019
Visitors: 2201