View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0182_low_12 (Length: 211)
Name: NF0182_low_12
Description: NF0182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0182_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 7969229 - 7969065
Alignment:
| Q |
1 |
aaactttgctatgcctatctttgcctccaaatgttcttgatactctcacaattcttggatttcttaaacttgatgatgtccatctcattgaggtacttga |
100 |
Q |
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| T |
7969229 |
aaactttgctatgcctatctttgcctccaaatgttcttgatactctcacaattcttggatttcttaaacttgatgttgaccattgtcttgatgtacttga |
7969130 |
T |
|
| Q |
101 |
aggtgcctttgaaattttttcaatattttccatattagtatcacctccttcttgctttgcttgat |
165 |
Q |
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| T |
7969129 |
aggtgcctttgaaattttttcaatattttccatactagtatcacctccttcttgctttgcttgat |
7969065 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 4516243 - 4516186
Alignment:
| Q |
3 |
actttgctatgcctatctttgcctccaaatgttcttgatactctcacaattcttggat |
60 |
Q |
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||||||||||| ||||| || || ||||| | |||||||||||| ||||||||||||| |
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| T |
4516243 |
actttgctatgtctatcctttccaccaaaagctcttgatactcttacaattcttggat |
4516186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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