View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0182_low_7 (Length: 286)
Name: NF0182_low_7
Description: NF0182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0182_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 66 - 286
Target Start/End: Complemental strand, 35821393 - 35821173
Alignment:
| Q |
66 |
cttttaatagtcctactaatgcaggtattgccctagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgc |
165 |
Q |
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| T |
35821393 |
cttttaatagtcctactaatgcaggtattgccctagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgc |
35821294 |
T |
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| Q |
166 |
attttctcttgcttccattgtttttccgaattcgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatc |
265 |
Q |
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| T |
35821293 |
attttctcttgcttccattgtttttccgaattcgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatc |
35821194 |
T |
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| Q |
266 |
gataggttgcacaatgcagtc |
286 |
Q |
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| T |
35821193 |
gataggttgaacaatgcagtc |
35821173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 254
Target Start/End: Complemental strand, 1023699 - 1023511
Alignment:
| Q |
66 |
cttttaatagtcctactaatgcaggtattgccctagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgc |
165 |
Q |
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| T |
1023699 |
cttttaatagtccaactagagaaagcattgctttagaacttgctccaatttgcactttacaatcatttatcatagataatctaaatatttctgctgtaac |
1023600 |
T |
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| Q |
166 |
attttctcttgcttccattgtttttccgaattcgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttat |
254 |
Q |
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| T |
1023599 |
agtttttcttgcttccatagtcattcctggttcaagtacttcaaatatgttgtgaaatgctccagctgccatgatcaaaatcttgttat |
1023511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 1047019 - 1047179
Alignment:
| Q |
94 |
tgccctagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgcattttctcttgcttccattgtttttccg |
193 |
Q |
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|||| |||||||| |||||||||||||||| |||||| | |||||| |||| ||||||||| |||||| ||||| |||||||||||| || ||||| |
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| T |
1047019 |
tgccttagaacttactccaatttgcactttgcaatcacctatcatacataagctatatatttctgctgtaacatttgttcttgcttccatagtctttcct |
1047118 |
T |
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| Q |
194 |
aattcgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttat |
254 |
Q |
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| T |
1047119 |
gattcaagtacttcaaatatgttgtcgactgcttttgctgccatgatcaaaatcttgttat |
1047179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 1010628 - 1010588
Alignment:
| Q |
99 |
tagaacttgctccaatttgcactttacaatcatcaatcata |
139 |
Q |
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| T |
1010628 |
tagaacttgctcaaatttgcactttacaatcatctatcata |
1010588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 40642223 - 40642317
Alignment:
| Q |
66 |
cttttaatagtcctactaatgcaggtattgccctagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgct |
160 |
Q |
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||||||||||||| |||| ||| | ||||| |||||||||||||||||| ||||||||||| ||| |||||||| || ||||||||| ||||| |
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| T |
40642223 |
cttttaatagtccaactagagcaagcattgctttagaacttgctccaatttacactttacaataatctatcatagagaatctatatatttctgct |
40642317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 28439427 - 28439383
Alignment:
| Q |
99 |
tagaacttgctccaatttgcactttacaatcatcaatcatagata |
143 |
Q |
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||||||| |||||||||||||||||||||||| | ||| |||||| |
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| T |
28439427 |
tagaactggctccaatttgcactttacaatcagctatcgtagata |
28439383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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