View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0183-INSERTION-1 (Length: 610)
Name: NF0183-INSERTION-1
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0183-INSERTION-1 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 50710553 - 50710805
Alignment:
| Q |
8 |
caattgatatttgaatttgtgagataacatatataaatgaaatgacatcaaattccatacttgcatgtttaattttgatagcaggatagtgatattaggc |
107 |
Q |
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| T |
50710553 |
caattgatatttgaatttgtgagataacatatataaatgaaatgacatcaaattccatacttgcatgtttaattttgatagcaggatagtgatattaggc |
50710652 |
T |
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| Q |
108 |
atgcgttttactttagaattgctgtggttgtgccgtttgttggcaaggagctcctagagaaactctaattttagtcatgagctgnnnnnnnaagcttgca |
207 |
Q |
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| T |
50710653 |
atgcgttttactttagaattgctgtggttgtgccgtttgttggcaaggagctcctagagaaactctaattttagtcatgagctgtttttttaagcttgca |
50710752 |
T |
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| Q |
208 |
atcgttttagagtca----gagatagatagataaataactcaattttatttta |
256 |
Q |
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| T |
50710753 |
atcgttttagagtcatagctagatagatagataattaactcaattttatttta |
50710805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 437 - 610
Target Start/End: Original strand, 50710953 - 50711126
Alignment:
| Q |
437 |
ttttgcataacattgtttctaaaaactgatctggttgtttgattttccatctaattgtgatgttagtttggttactattgatataccgactattcaatca |
536 |
Q |
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| T |
50710953 |
ttttgcataacattgtttctaaaaactgatctggttgtttgattttccatctatttgtgatgttagcttggttactattgatatacccattattcaatca |
50711052 |
T |
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| Q |
537 |
atgaattaagtgttaatgttgtagattcatcatattatttatagttattttaccactatatactattaacttat |
610 |
Q |
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| T |
50711053 |
atgaattaagtgttaatgttgtagattcatcatattatttattgttattttaccgctatatactattaacttat |
50711126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 50710788 - 50710880
Alignment:
| Q |
266 |
taactcaatttttattttaacgaactactccgtccatctaataaaaactataatgttttattatatagagctcaaagttgatttttgtggaatg |
359 |
Q |
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| T |
50710788 |
taactcaatttt-attttaacgaactactccatccatctaataaaaactataatgttttattatatagagctcaaagttgatttttgtggaatg |
50710880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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