View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0183-INSERTION-10 (Length: 694)
Name: NF0183-INSERTION-10
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0183-INSERTION-10 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 694
Target Start/End: Complemental strand, 46130652 - 46129955
Alignment:
| Q |
8 |
tttgcctgaaccatcctgagtaagccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaat |
107 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46130652 |
tttgcctgaaccatcccgagtaatccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaat |
46130553 |
T |
|
| Q |
108 |
gctggtaagatctgaaaaggataacaaaaccatttctaaattcattatat--------------aggatatgctaaatttactgcacatgctatccttgc |
193 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46130552 |
gctggtaagatctgaaaaa-ataacaaaaccatttctaaattcattatatttattaaattatataggatatgctaaatttactgcacatgctatccttgc |
46130454 |
T |
|
| Q |
194 |
aaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataacgttggcaaaagcccatatagcaatcctccatgtagatttttctgttg |
293 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46130453 |
aaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataacgttggcaaaagcccatatagcaatcctccatgtagatttttctgttg |
46130354 |
T |
|
| Q |
294 |
aagaaggattccacaacagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgc |
393 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46130353 |
cagaaggattccacaacagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgc |
46130254 |
T |
|
| Q |
394 |
ccataatgcctgttcaatacatgagacgttgaaattctgtaagcgatcgactcatacatagatgcatgcatacacgatagttttctcaaagcaattatgc |
493 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46130253 |
ccataatgcctgttcaatacatgagacattgaaattgtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaattatgc |
46130154 |
T |
|
| Q |
494 |
cacgagattgaggaagacatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgttcaatcacagtat |
593 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46130153 |
cacgagattgaggaagacatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgttcaatcacagtat |
46130054 |
T |
|
| Q |
594 |
ttgtatgctcagacaatcccgcggtgacatttgatcagagtcccatgctgccatggactgcacatataatatttgtgagtgaggtcaaaatcatctcatt |
693 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46130053 |
ttgtatgctcagacaatcccgcggtgaca-ttgatcagagt-ccatgctgccatggactgcagatataatatttgtgagtgaggtcaaaatcatctcatt |
46129956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 151 - 694
Target Start/End: Complemental strand, 46703277 - 46702739
Alignment:
| Q |
151 |
attatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataacgttg |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| || |||||| |||| |
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| T |
46703277 |
attatataggatatgctaaatttactgcacatgctatccttgcaaagttttcccaacctgatcctcaagagttagaggaggcttttcacgaataatgttg |
46703178 |
T |
|
| Q |
251 |
gcaaaagcccatatagcaatcctccatgtagatttttctgttgaagaaggattccacaacagagacaataatggaggaagtgcaccatgatttaaaacaa |
350 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
46703177 |
acaaaagcccatatagcaatcctccatgtagatttttttgt---agaaggattccacaacagagacaataatggagaaagtgcaccattatttaaaacaa |
46703081 |
T |
|
| Q |
351 |
catccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttcaatacatgagacgttgaaattctgtaagcgatcgactcatac |
450 |
Q |
| |
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|||| | |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || ||||| |
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| T |
46703080 |
gatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacattgaaattctgtaagggatcaacacatac |
46702981 |
T |
|
| Q |
451 |
atagatgcatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccgtcatcactaccagagctcaga |
550 |
Q |
| |
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|||||| ||||||||||| || |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46702980 |
atagatacatgcatacacaatggttttctcaatgcaattatgccaagagattgaagaagacatcacctgttctttgccgtcatcacaaccagagctcaga |
46702881 |
T |
|
| Q |
551 |
agcttcacaaggagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgcggtgacatttgatcagagtcccatgctgccatgga |
650 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||| |||| || ||||||||||||||| |
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| T |
46702880 |
agctgcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgccgcgata-ttggtcagtgt-ccatgctgccatgga |
46702783 |
T |
|
| Q |
651 |
ctgcacatataatatttgtgagtgaggtcaaaatcatctcattc |
694 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
46702782 |
ctgcagatataatatctgtgagtgaggtcaaaatcatctcattc |
46702739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 152 - 666
Target Start/End: Complemental strand, 46124486 - 46123974
Alignment:
| Q |
152 |
ttatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataacgttgg |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| || |||| || || | | |||| |
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| T |
46124486 |
ttatataggatatgctaaatttactgcacatgctatccttgcaaatttttcccaacctgattctgaagagttagaagaggctttccgcgagtgaagttga |
46124387 |
T |
|
| Q |
252 |
caaaagcccatatagcaatcctccatgtagatttttctgttgaagaaggattccacaacagagacaataatggaggaagtgcaccatgatttaaaacaac |
351 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |
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| T |
46124386 |
aaaaagcccatgtagcaatattccatgtagatttttttgttgaagaaggattccacatcaaagacaatagtggagaaagtgcaccatgatttaaaacaat |
46124287 |
T |
|
| Q |
352 |
atccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttcaatacatgagacgttgaaattctgtaagcgatcgactcataca |
451 |
Q |
| |
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|||| | |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
46124286 |
atcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacattgaaattgtgtaagcgatcgactcataca |
46124187 |
T |
|
| Q |
452 |
tagatgcatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccgtcatcactaccagagctcagaa |
551 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46124186 |
tagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccgtcatcactgccagagctcagaa |
46124087 |
T |
|
| Q |
552 |
gcttcacaaggagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgcggtgacatttgatcagagtcccatgctgccatggac |
651 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
46124086 |
gcttcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgttcagacaatcccgcagtgaca-ttgatcagagt-ccatgctgccatggac |
46123989 |
T |
|
| Q |
652 |
tgcacatataatatt |
666 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
46123988 |
tgcagatataatatt |
46123974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 46703462 - 46703342
Alignment:
| Q |
13 |
ctgaaccatcctgagtaagccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaatgctgg |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46703462 |
ctgaacaatcctgagtaagccagtagagaatagagcatgcatatagttgaactgattcatcaggcatcaataagagttcccgaaggccagacaatgctgg |
46703363 |
T |
|
| Q |
113 |
taagatctgaaaaggataaca |
133 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
46703362 |
taagatctgaaaaggataaca |
46703342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 46124676 - 46124551
Alignment:
| Q |
8 |
tttgcctgaaccatcctgagtaagccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaat |
107 |
Q |
| |
|
|||| ||||||| | |||||||| |||| |||| | | |||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |||| |
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| T |
46124676 |
tttgtctgaacctttctgagtaaaccaggagaggagatggcatgcatatagtataacttcttcatcaggcatcaataagagctcctgaaggccagacaat |
46124577 |
T |
|
| Q |
108 |
gctggtaagatctgaaaaggataaca |
133 |
Q |
| |
|
||||||| ||||||||| ||||||| |
|
|
| T |
46124576 |
gctggtagcatctgaaaaagataaca |
46124551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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