View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0183-INSERTION-4 (Length: 587)

Name: NF0183-INSERTION-4
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0183-INSERTION-4
NF0183-INSERTION-4
[»] chr4 (22 HSPs)
chr4 (8-587)||(3671646-3672231)
chr4 (379-539)||(55635535-55635696)
chr4 (379-539)||(54861868-54862028)
chr4 (379-535)||(55665264-55665423)
chr4 (204-377)||(55659293-55659466)
chr4 (198-377)||(55635267-55635446)
chr4 (379-530)||(54627314-54627465)
chr4 (439-535)||(52985562-52985658)
chr4 (198-366)||(54862124-54862292)
chr4 (198-366)||(55665516-55665684)
chr4 (379-542)||(55659042-55659208)
chr4 (66-185)||(55659575-55659694)
chr4 (66-184)||(54862390-54862508)
chr4 (397-539)||(50191742-50191884)
chr4 (198-365)||(54627049-54627216)
chr4 (66-143)||(54626843-54626920)
chr4 (85-148)||(51315736-51315799)
chr4 (207-292)||(52985831-52985916)
chr4 (85-133)||(52986667-52986715)
chr4 (85-130)||(50192339-50192384)
chr4 (9-54)||(55659815-55659860)
chr4 (66-130)||(55635045-55635109)
[»] chr8 (5 HSPs)
chr8 (190-377)||(9889544-9889731)
chr8 (375-542)||(9889810-9889977)
chr8 (58-184)||(9889319-9889445)
chr8 (9-59)||(9889179-9889229)
chr8 (542-587)||(9890056-9890101)
[»] chr2 (4 HSPs)
chr2 (379-539)||(13401715-13401875)
chr2 (198-364)||(13401445-13401611)
chr2 (96-136)||(13401257-13401297)
chr2 (544-580)||(13401970-13402006)
[»] chr1 (3 HSPs)
chr1 (420-496)||(37310524-37310600)
chr1 (441-496)||(22514483-22514538)
chr1 (95-139)||(37311443-37311487)
[»] chr7 (1 HSPs)
chr7 (420-495)||(46154649-46154724)


Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Complemental strand, 3672231 - 3671646
Alignment:
Q  8 cgttcctcgtcttgttgaatttctagttattgacgattttcctcaacgccagttttttgctgcttggatactcgcatacatagcaggtggaacttctgag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3672231 cgttcctcgtcttgttgaatttctagttattgacgattttcctcaacgccagttttttgctgcttggatactcgcatacatagcaggtggaacttctgag 3672132  T
Q  108 aacactaaggttgtaattgatcatggggctgtaccattactagtcaacctactcagtt-----cacctagtgttgctgttcgacatgaggcttcatgggc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||    
T  3672131 aacactaaggttgtaattgatcatggggctgtaccattactagtcaacctactcagttacgttcacctagtgttgctgttcgacatgaagcttcatgggc 3672032  T
Q  203 gttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagat 302  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3672031 gttgggaaacgttgcctgtgattcccctagttgccgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttacagat 3671932  T
Q  303 atttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcagttgaggccagcacttcccactctcg 402  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3671931 atttctatgctgagagttgcaacgcgaaccctgtcaaacttttgcatgggcaaaccacaacccctgtttgagcagttgacgccagcacttcccactctcg 3671832  T
Q  403 agcgtttgatt-ttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtga 501  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671831 agcgtttgatttttttccaatgatcaagaagtcatggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtga 3671732  T
Q  502 tcgaggcaggtgtatgtggcagactggtggagctccttttgaacccatctccttcagtggtgattcctgcacttcgcacattggga 587  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  3671731 tcgaggcaggtgtttgtggcagactggtggagctcctttcgaacccatctccttcagtggtgattcctgcactccgcacattggga 3671646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 379 - 539
Target Start/End: Original strand, 55635535 - 55635696
Alignment:
Q  379 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcat-atctttctgatggaa 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  55635535 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatgaagaagtcctgtcagatgcatgctgggcactctcataatatttctgatggaa 55635634  T
Q  478 caaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 539  Q
      ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  55635635 tgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctcctt 55635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 379 - 539
Target Start/End: Complemental strand, 54862028 - 54861868
Alignment:
Q  379 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 478  Q
    |||||||||| |||||| ||||| ||| |||| |||||||||| ||  ||||||||||  | |||||||| ||||||||||| |||||||||||||||||    
T  54862028 tgaggccagcgcttcccgctctcaagcatttggttttttccaaagacgaagaagtcctaaccgatgcatggtgggcactctcgtatctttctgatggaac 54861929  T
Q  479 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 539  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54861928 aaatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagactggtgcagctcctt 54861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 379 - 535
Target Start/End: Complemental strand, 55665423 - 55665264
Alignment:
Q  379 tgaggccagcacttcccactctcgagcgtttgattttttccaatga---tcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatgg 475  Q
    |||||||||| || ||| |||| |||||||||||||| ||||||||   | |||||||||||   |||||||| |||||| |||||||||||||||||||    
T  55665423 tgaggccagcgctgccctctcttgagcgtttgattttgtccaatgacgatgaagaagtcctgagtgatgcatgttgggcattctcatatctttctgatgg 55665324  T
Q  476 aacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 535  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55665323 aacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagct 55665264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 204 - 377
Target Start/End: Complemental strand, 55659466 - 55659293
Alignment:
Q  204 ttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagata 303  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||  ||| |      
T  55659466 ttgggaaatgttgccggtgattcccctagttgtcgtgatcttgttctcagtcatggtgcgttgatcccgctgttatcccagttgaatgagcaagcaaagc 55659367  T
Q  304 tttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 377  Q
    ||||||||||||||||||| |||    ||||||||||||||||||| || ||||||| |||||  |||||||||    
T  55659366 tttctatgctgagaattgctacgttggccctgtcaaacttttgcagaggaaaaccaccacccccatttgagcag 55659293  T

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Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 198 - 377
Target Start/End: Original strand, 55635267 - 55635446
Alignment:
Q  198 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 297  Q
    ||||| ||||||||||||||| |||| |||||| | || ||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||  |    
T  55635267 tgggcattgggaaacgttgccggtgagtccccttggtgccgtgatcttgttctcagtcatggtgccctgattccactgttatcccagttgaatgagcaag 55635366  T
Q  298 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 377  Q
    ||    ||||||||||||||||||| ||  | ||| ||||||||||||||||||| || ||||||||||| |||||||||    
T  55635367 caaggctttctatgctgagaattgccacatggaccttgtcaaacttttgcaggggaaagccacaacccctatttgagcag 55635446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 379 - 530
Target Start/End: Original strand, 54627314 - 54627465
Alignment:
Q  379 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 478  Q
    ||||| |||| |||||| ||||| || ||||| |||||||||| ||| |||  |||||| | || ||||| ||||||||||| |||||||||||||||||    
T  54627314 tgaggtcagcgcttcccgctctcaagtgtttggttttttccaaagatgaagtcgtcctgaccgaggcatgttgggcactctcgtatctttctgatggaac 54627413  T
Q  479 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtg 530  Q
    || ||| || |||||||||||||||||||||||||||||||| |||||||||    
T  54627414 aagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtg 54627465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 439 - 535
Target Start/End: Complemental strand, 52985658 - 52985562
Alignment:
Q  439 cagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 535  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  52985658 cagatgcatgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagct 52985562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 198 - 366
Target Start/End: Complemental strand, 54862292 - 54862124
Alignment:
Q  198 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 297  Q
    ||||| ||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |       
T  54862292 tgggcattgggaaacattgctggtgattcccctaggtgtcgtgatcttgttctcagtcatggtgccctgatcccgctgttatcccagttgaatgaccaaa 54862193  T
Q  298 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccc 366  Q
    ||||  ||| |||  |||||| ||| |   | ||| |||||||||||||||||||||| ||||||||||    
T  54862192 cagagctttatatattgagaaatgccatttggaccttgtcaaacttttgcaggggcaagccacaacccc 54862124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 198 - 366
Target Start/End: Complemental strand, 55665684 - 55665516
Alignment:
Q  198 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 297  Q
    ||||| ||||||||| ||||| ||||||||||||| || |||||||||||| |||||||||||||  |||||||||||||| |||| ||||||||||  |    
T  55665684 tgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgttttcagtcatggtgcgctgatcccgctgttaacccagttgaatgagcaag 55665585  T
Q  298 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccc 366  Q
    || |  |||||||||||||| |||| ||| | |||||||||| ||||||||  ||||| |||| |||||    
T  55665584 caaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccc 55665516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 379 - 542
Target Start/End: Complemental strand, 55659208 - 55659042
Alignment:
Q  379 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttct---gatgg 475  Q
    |||||| ||||||||| || |||  |||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||    ||||    
T  55659208 tgaggcaagcacttcctaccctcaggcgtttgattttttccaatgatgaagaagtcgtgacagaagcatgctgggcactctcatatctttctaaatatgg 55659109  T
Q  476 aacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 542  Q
      |||||||| ||||||||||||| |||||||| ||  ||||||  ||||| || ||||||||||||    
T  55659108 ttcaaatgacgaaatccaagcggtaatcgaggctggcatatgtgatagactagtagagctccttttg 55659042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 55659694 - 55659575
Alignment:
Q  66 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacctactcagtt 165  Q
    ||||||||||||||| |  || |||||||||||||||||| |||||||||||| || |||||||| |||||||||||| |||| ||||| ||||| ||||    
T  55659694 gctgcttggatactcacgaacgtagcaggtggaacttctgtgaacactaaggtggtcattgatcacggggctgtaccaatacttgtcaagctacttagtt 55659595  T
Q  166 cacctagtgttgctgttcga 185  Q
    ||||||| | || |||||||    
T  55659594 cacctagcgatgatgttcga 55659575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 54862508 - 54862390
Alignment:
Q  66 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacctactcagtt 165  Q
    |||||||||  |||| || ||||||||  ||||||||| |||||||||||||| ||||||||||||||||| |||||| || |  |||| ||||| ||||    
T  54862508 gctgcttgggcactcacaaacatagcatctggaacttcggagaacactaaggtggtaattgatcatggggcagtaccaatatttatcaagctacttagtt 54862409  T
Q  166 cacctagtgttgctgttcg 184  Q
    |||| |||| |||||||||    
T  54862408 caccaagtgatgctgttcg 54862390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 539
Target Start/End: Complemental strand, 50191884 - 50191742
Alignment:
Q  397 ctctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 496  Q
    |||| |||||||||||||| ||  | ||| ||||||| ||| ||||||| ||||||||  | ||||| || |||||||| |||||||||||||||||||     
T  50191884 ctcttgagcgtttgattttgtcggaggatgaagaagttctgacagatgcctgctgggctttatcatacctatctgatggcacaaatgacaaaatccaaga 50191785  T
Q  497 ggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 539  Q
      | || || ||||||||||||||| || ||||| ||||||||    
T  50191784 aattattgacgcaggtgtatgtggccgattggtgcagctcctt 50191742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 198 - 365
Target Start/End: Original strand, 54627049 - 54627216
Alignment:
Q  198 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 297  Q
    ||||| ||||||||| ||||  |||||||||||||  | |||||||||||||||||||| |||||| ||||||  || ||||||||  |||||||||  |    
T  54627049 tgggcattgggaaacattgctggtgattcccctagaggccgtgatcttgttctcagtcacggtgccctgatcctacttttatcccagctgaatgagcaag 54627148  T
Q  298 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaaccc 365  Q
     ||   ||| || |||||||| |||     | || ||||||||||||||||||||||| |||||||||    
T  54627149 aagggctttataggctgagaaatgccgtttggacgctgtcaaacttttgcaggggcaagccacaaccc 54627216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 54626843 - 54626920
Alignment:
Q  66 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtacca 143  Q
    |||||||||  |||| || ||||||||| |||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  54626843 gctgcttgggcactcacaaacatagcagctggaacttctgagaacactaaggtggtagttgatcatggcgcagtacca 54626920  T

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Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 51315736 - 51315799
Alignment:
Q  85 acatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattact 148  Q
    ||||||||| |||||||||||||||||||||| |  ||||||||||||| ||||||||| ||||    
T  51315736 acatagcagctggaacttctgagaacactaagttgctaattgatcatggagctgtaccaatact 51315799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 52985916 - 52985831
Alignment:
Q  207 ggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatga 292  Q
    ||||||||||||  |||||||||||  || |||||||||||| |||||||||||||| |||||||  || ||||||| || |||||    
T  52985916 ggaaacgttgccgttgattcccctatgtgccgtgatcttgttttcagtcatggtgccttgatcccattgctatcccagttcaatga 52985831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 52986715 - 52986667
Alignment:
Q  85 acatagcaggtggaacttctgagaacactaaggttgtaattgatcatgg 133  Q
    |||||| || |||||||||| ||||||||||||| ||||||||||||||    
T  52986715 acatagtagctggaacttctaagaacactaaggtggtaattgatcatgg 52986667  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 50192384 - 50192339
Alignment:
Q  85 acatagcaggtggaacttctgagaacactaaggttgtaattgatca 130  Q
    ||||||||  |||||||||||||||||||||||| || ||||||||    
T  50192384 acatagcatctggaacttctgagaacactaaggtggtgattgatca 50192339  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 55659860 - 55659815
Alignment:
Q  9 gttcctcgtcttgttgaatttctagttattgacgattttcctcaac 54  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||||    
T  55659860 gttcctcgttttgttgaatttctatttagggacgattttcctcaac 55659815  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 55635045 - 55635109
Alignment:
Q  66 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatca 130  Q
    |||||||||  |||| || ||||||||   |||||||||||||||| |||||| |||||||||||    
T  55635045 gctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatca 55635109  T

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Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 190 - 377
Target Start/End: Original strand, 9889544 - 9889731
Alignment:
Q  190 aggcttcatgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaa 289  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889544 aggcttcgtgggcgttgggaaacgttgcctgtgattcccctagttgccgttatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaa 9889643  T
Q  290 tgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 377  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  9889644 tgagctagcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgtaggggcaaaccgcaacccctgtttgagcag 9889731  T

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Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 375 - 542
Target Start/End: Original strand, 9889810 - 9889977
Alignment:
Q  375 cagttgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatg 474  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889810 cagttgaggccagcacttcccactctcgagcttttgattttttccaatgatgaagaagtcctggcagatgcatgctgggcactctcatatctttctgatg 9889909  T
Q  475 gaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889910 gaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 9889977  T

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Target: chr8; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 9889319 - 9889445
Alignment:
Q  58 agttttttgctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacct 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889319 agttttttgctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacct 9889418  T
Q  158 actcagttcacctagtgttgctgttcg 184  Q
    |||||||||||||||||||||||||||    
T  9889419 actcagttcacctagtgttgctgttcg 9889445  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 9889179 - 9889229
Alignment:
Q  9 gttcctcgtcttgttgaatttctagttattgacgattttcctcaacgccag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889179 gttcctcgtcttgttgaatttctagttattgacgattttcctcaacgccag 9889229  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 542 - 587
Target Start/End: Original strand, 9890056 - 9890101
Alignment:
Q  542 gaacccatctccttcagtggtgattcctgcacttcgcacattggga 587  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  9890056 gaacccttctccttcagtggtgattcctgcacttcgcacattggga 9890101  T

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Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 379 - 539
Target Start/End: Original strand, 13401715 - 13401875
Alignment:
Q  379 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 478  Q
    ||||||||||||||||  |||| ||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  13401715 tgaggccagcacttccggctcttgagcgtttggttttttcaaatgatgaagaagtcctgacagatgcatgctgggcactctcttatctttctgatggaac 13401814  T
Q  479 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 539  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  13401815 aaatgacaaaatccaagcggtgattgaggcaggtgtatgtggcagactagtgcagctcctt 13401875  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 198 - 364
Target Start/End: Original strand, 13401445 - 13401611
Alignment:
Q  198 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 297  Q
    ||||| |||||||| |||||  ||||||| ||||| || || ||||||||||| || ||||||||| |||||||||||||| |||| ||||||||||  |    
T  13401445 tgggcattgggaaatgttgctggtgattcacctaggtgccgcgatcttgttcttagccatggtgccctgatcccgctgttaacccagttgaatgagcagg 13401544  T
Q  298 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacc 364  Q
    || |  |||| |||||||||| ||| ||  | || ||||||||||||||||||||||| ||||||||    
T  13401545 caaagctttcaatgctgagaaatgccacatggactctgtcaaacttttgcaggggcaagccacaacc 13401611  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 13401257 - 13401297
Alignment:
Q  96 ggaacttctgagaacactaaggttgtaattgatcatggggc 136  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  13401257 ggaacttctgagaatactaaggtggtaattgatcatggggc 13401297  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 580
Target Start/End: Original strand, 13401970 - 13402006
Alignment:
Q  544 acccatctccttcagtggtgattcctgcacttcgcac 580  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  13401970 acccatctccttcagtgctgatccctgcacttcgcac 13402006  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 37310600 - 37310524
Alignment:
Q  420 aatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 496  Q
    |||||| |||||||| || | ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||    
T  37310600 aatgatgaagaagtcttgactgatgcctgctgggcactatcatatctttctgatggtacaaacgataaaattcaagc 37310524  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 22514538 - 22514483
Alignment:
Q  441 gatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 496  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  22514538 gatgcctgctgggcactatcatatctttctgatggtacaaatgaaaaaattcaagc 22514483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 37311487 - 37311443
Alignment:
Q  95 tggaacttctgagaacactaaggttgtaattgatcatggggctgt 139  Q
    |||||| ||||| ||||||||||| |||||||| |||||||||||    
T  37311487 tggaacatctgaaaacactaaggtggtaattgaccatggggctgt 37311443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 495
Target Start/End: Complemental strand, 46154724 - 46154649
Alignment:
Q  420 aatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaag 495  Q
    |||||| |||||||| || | ||||| || |||||||| |||||||||||||||||  ||||||||||||| ||||    
T  46154724 aatgatgaagaagtcttgactgatgcctgttgggcactttcatatctttctgatggtgcaaatgacaaaattcaag 46154649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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