View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0183-INSERTION-5 (Length: 711)
Name: NF0183-INSERTION-5
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 276 - 707
Target Start/End: Complemental strand, 27819534 - 27819096
Alignment:
| Q | 276 | atgtttatgccttttatgaaatccctttgctcctttgaaatgttgttgggcattatctgggacaatctatcagctaaaactctagagattatcttgaatt | 375 | Q |
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| T | 27819534 | atgtttatgccttttatgaaacccctttgctcctttgaaatgatgttgggcattatctgggacaatctatcagctaaaactctagagattatcttgaatt | 27819435 | T |
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| Q | 376 | tgaaatttaccattgctattggtttgtactaatcaaatatttgcattgaagtttggcagcaactatcatgtgttgaagaactcaatgatttgcattgatt | 475 | Q |
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| T | 27819434 | tgaaatttaccattgctattggtttgtactaatcaaatatttgcattgaagtttggcagcaactatcatgtgttgaagaactcaatgatttgcattgatt | 27819335 | T |
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| Q | 476 | acatcttagttgtattctttatttcatcaattatatgaaaatagttgctgttcttgtcaccttctcagtgccaattaactttagccaaaaccagccttct | 575 | Q |
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| T | 27819334 | acatcttagttgtattctttatttcatcaattatatgaaaatagttgctgttcttgtcaccttcttagtgccaattaactttagccaaaaccagccttct | 27819235 | T |
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| Q | 576 | ctc----tctcataatttgaattggtaaatgtatgtgtttgtaatgaatttgaatctttgaagnnnnnnnnnngattttattatga--gaatagaaaatg | 669 | Q |
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| T | 27819234 | ctctctctctcataatttgaattggtaaatgtatgtgtttgtaatgaatttgaatctttgaagaaaaaaaaagatttttattatgaagaaatagaaaatg | 27819135 | T |
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| Q | 670 | gatacatatattttatgaaatctct-aattattgaacgt | 707 | Q |
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| T | 27819134 | gatacatatattttatgaaatctctaaattattgaacgt | 27819096 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 39 - 266
Target Start/End: Complemental strand, 27819816 - 27819589
Alignment:
| Q | 39 | agtaaccatgcatttcaccatcaatagatatatagatagagttgctaatttgaaaatggcttcaatccaactgcagaacactagattgaacctaaatcct | 138 | Q |
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| T | 27819816 | agtaaccatgcatttcaccatcaatagatatatagatagagttgctaatttgaaaatggcttcaatccaactgcagaacactagattgaacctaaatcct | 27819717 | T |
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| Q | 139 | ttcaatactttgag-aaaaaagaccactccaaggtatcgaaagctttggttatatctatttttcagaaatagattactaccaaaactttgttgtgtaaaa | 237 | Q |
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| T | 27819716 | ttcaatactttgagcaaaaaagaccactccaaggtat-aaaagctttggttacatctatttttcagaaatagattactaccaaaactttgttgtgtaaaa | 27819618 | T |
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| Q | 238 | tgttagttgccttataagcgacacatata | 266 | Q |
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| T | 27819617 | tgttagttgccttataagcgacacatata | 27819589 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 27819590 - 27819558
Alignment:
| Q | 233 | taaaatgttagttgccttataagcgacacatat | 265 | Q |
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| T | 27819590 | taaaatgttagttgccttataagcgacacatat | 27819558 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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