View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0183-INSERTION-6 (Length: 465)

Name: NF0183-INSERTION-6
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0183-INSERTION-6
NF0183-INSERTION-6
[»] chr2 (3 HSPs)
chr2 (221-465)||(36443035-36443273)
chr2 (8-120)||(36442798-36442910)
chr2 (223-327)||(30393169-30393273)
[»] chr8 (3 HSPs)
chr8 (223-326)||(11539057-11539160)
chr8 (221-280)||(32978459-32978518)
chr8 (282-326)||(11049791-11049835)
[»] chr3 (2 HSPs)
chr3 (223-326)||(43491970-43492073)
chr3 (240-318)||(43752164-43752242)
[»] chr7 (5 HSPs)
chr7 (223-305)||(2916192-2916274)
chr7 (221-298)||(42597307-42597384)
chr7 (271-327)||(42597388-42597444)
chr7 (257-328)||(27035251-27035322)
chr7 (257-298)||(40519366-40519407)
[»] chr1 (4 HSPs)
chr1 (257-327)||(30518754-30518824)
chr1 (257-297)||(26515769-26515809)
chr1 (234-328)||(14614972-14615066)
chr1 (267-324)||(17985736-17985793)
[»] chr6 (1 HSPs)
chr6 (239-304)||(10385328-10385393)
[»] chr5 (1 HSPs)
chr5 (257-326)||(14791028-14791097)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 221 - 465
Target Start/End: Original strand, 36443035 - 36443273
Alignment:
Q  221 catttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagt 320  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36443035 catttttcgtagttaagtgtctattttt-tgtacgtaaaagtcat-tttgaaccaatgtttatatatttaattacaacctaattacttatcattataagt 36443132  T
Q  321 ggtgttga--nnnnnnnnnaattctttttataaaaagttgtcaagattacaactgaacctctatagattgtcgggaacggccttgttaagatttaagata 418  Q
    ||||||||           |||||||||||||||||||||||||||||||||||||      ||| |||||| |||||||||||||||||||||||||||    
T  36443133 ggtgttgatttttttttttaattctttttataaaaagttgtcaagattacaactga------ataaattgtctggaacggccttgttaagatttaagata 36443226  T
Q  419 ccttatcctatgaatataattcaattgatagacattcgtttataaga 465  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36443227 ccttatcctatgaacataattcaattgatagacattcgtttataaga 36443273  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 36442798 - 36442910
Alignment:
Q  8 catgtttggcatgatgttggatcattcatccccacacttggtcgcccttttctgaaagagttaagatgcatgcttattatgattcaggcccgtccctaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36442798 catgtttggcatgatgttggatcattcatccccacacttggtcgcccttttctgaaagagttaagatgcatgcttattatgattcaggcccgtccctaag 36442897  T
Q  108 taagaacaaggag 120  Q
    ||||| |||||||    
T  36442898 taagagcaaggag 36442910  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 30393169 - 30393273
Alignment:
Q  223 tttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtgg 322  Q
    |||||||| | ||| ||||||||| | ||||   |||||||||||||||||||||| | ||||||||||  ||||  |||||| |||||||||||||| |    
T  30393169 tttttcgttggtaaatgtctatttgtttgtagataaaagtcatgtttgaaccaatgctaatatatttaaccacaaattaattatttatcactataagtag 30393268  T
Q  323 tgttg 327  Q
    |||||    
T  30393269 tgttg 30393273  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 11539160 - 11539057
Alignment:
Q  223 tttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtgg 322  Q
    |||||||||| |||  |||||||| | ||||   |||||||||||||||||||||| | |||||||||| || ||| |||||| ||||| ||||||| ||    
T  11539160 tttttcgtaggtaaaagtctatttgtttgtatataaaagtcatgtttgaaccaatgctcatatatttaactataacttaattatttatcgctataagagg 11539061  T
Q  323 tgtt 326  Q
    ||||    
T  11539060 tgtt 11539057  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 32978518 - 32978459
Alignment:
Q  221 catttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtt 280  Q
    ||||||| |||| ||||||||||||| |||||| | ||||||||||||| ||||||||||    
T  32978518 cattttttgtaggtaagtgtctatttgtctgtaggtaaaagtcatgtttaaaccaatgtt 32978459  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 11049791 - 11049835
Alignment:
Q  282 atatatttaattacaacctaattacttatcactataagtggtgtt 326  Q
    |||||||||| || ||| |||||| ||||||||||||||||||||    
T  11049791 atatatttaactataacttaattatttatcactataagtggtgtt 11049835  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 43491970 - 43492073
Alignment:
Q  223 tttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtgg 322  Q
    |||||| ||||||| ||||||||| ||||||   ||||||||| ||| ||  |||  | |||||||||| |||||| ||||||||||||||||| |||||    
T  43491970 tttttcttagataaatgtctatttatctgtagataaaagtcatatttaaattaatactcatatatttaactacaacttaattacttatcactatgagtgg 43492069  T
Q  323 tgtt 326  Q
    ||||    
T  43492070 tgtt 43492073  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 43752164 - 43752242
Alignment:
Q  240 tctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataa 318  Q
    ||||||| | |||| | ||||||||||||||||||| |||| ||||||||||||||||  ||||||  |||||||||||    
T  43752164 tctatttatttgtaggtaaaagtcatgtttgaaccattgttcatatatttaattacaatttaattatctatcactataa 43752242  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 2916274 - 2916192
Alignment:
Q  223 tttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaatta 305  Q
    |||||||||| ||| ||||||||| ||||||   |||||||||||||||||||||  | |||||||||| |||||| ||||||    
T  2916274 tttttcgtaggtaaatgtctatttgtctgtagataaaagtcatgtttgaaccaattctcatatatttaactacaacttaatta 2916192  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 42597307 - 42597384
Alignment:
Q  221 catttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaac 298  Q
    ||||||| |||| ||| |||||||||  |||||   |||||||||||||||||||||| | |||||||||||||||||    
T  42597307 cattttttgtaggtaaatgtctatttgactgtagataaaagtcatgtttgaaccaatgctaatatatttaattacaac 42597384  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 42597388 - 42597444
Alignment:
Q  271 aaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgttg 327  Q
    |||||||| | ||||||||||||||||| |||||| ||||| |||||||||||||||    
T  42597388 aaccaatgctaatatatttaattacaacttaattatttatccctataagtggtgttg 42597444  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 27035251 - 27035322
Alignment:
Q  257 aaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgttga 328  Q
    ||||||||||||||||||| || |||||||||||| |||||| |||||   ||||||||||| | |||||||    
T  27035251 aaaagtcatgtttgaaccattgcttatatatttaactacaacttaattgtctatcactataaatagtgttga 27035322  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 40519366 - 40519407
Alignment:
Q  257 aaaagtcatgtttgaaccaatgtttatatatttaattacaac 298  Q
    |||||| |||||||||||| |||| |||||||||||||||||    
T  40519366 aaaagtaatgtttgaaccattgttgatatatttaattacaac 40519407  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 30518754 - 30518824
Alignment:
Q  257 aaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgttg 327  Q
    |||||||||||||||||||||  | ||||| |||| |||||| |||||| |||| ||||||||||||||||    
T  30518754 aaaagtcatgtttgaaccaatactcatataattaactacaacttaattatttataactataagtggtgttg 30518824  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 26515769 - 26515809
Alignment:
Q  257 aaaagtcatgtttgaaccaatgtttatatatttaattacaa 297  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  26515769 aaaagtcatgtttgaaccattgtttatatatttaactacaa 26515809  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 328
Target Start/End: Original strand, 14614972 - 14615066
Alignment:
Q  234 taagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgttga 328  Q
    |||||||||| || |||||| | |||||||||||| || |  ||||| |||||||||| |||||  |||||| ||||| ||||||| || |||||    
T  14614972 taagtgtctaattgtctgtaggtaaaagtcatgttcgagcatatgttcatatatttaactacaatttaattatttatctctataagcggggttga 14615066  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 17985736 - 17985793
Alignment:
Q  267 tttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtg 324  Q
    |||||||||||| | |||||||| |||||| | |||||| || |||||||||||||||    
T  17985736 tttgaaccaatgctcatatatttcattacatcttaattatttttcactataagtggtg 17985793  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 10385393 - 10385328
Alignment:
Q  239 gtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaatt 304  Q
    |||||||| || ||| | ||||||||||||||||||| | ||||||||||||| |||||| |||||    
T  10385393 gtctatttgtccgtaggtaaaagtcatgtttgaaccattatttatatatttaactacaacttaatt 10385328  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 14791028 - 14791097
Alignment:
Q  257 aaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgtt 326  Q
    ||||||| |||||||||||||| |||||||||||| || ||| |||| | |||||||| ||| |||||||    
T  14791028 aaaagtcgtgtttgaaccaatgcttatatatttaactaaaacttaatcatttatcactttaaatggtgtt 14791097  T

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