View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0183-INSERTION-7 (Length: 747)
Name: NF0183-INSERTION-7
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0183-INSERTION-7 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 52412203 - 52411825
Alignment:
| Q |
8 |
gtattatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaagttcttctgctatacaattcactcttattcttgactgcaaattt |
107 |
Q |
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| T |
52412203 |
gtattagcatcaaatcaattgtattgtccaatattatatgaaatgagaataaaaaagttattctgctatacaattcattcttattcttgactgcaaattt |
52412104 |
T |
|
| Q |
108 |
ttctgctattcttgaatcactgcataaaacttaactgcaacagaaaaacattgtaaagagaaattggtgtgcttttcttcaggttttggtgagtgataat |
207 |
Q |
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| T |
52412103 |
ttctgctgttcttcaatcacttcataaaacttaacagcaacaaaaaaacactgtgaagagaaattggtgtgattttcttcaggttttggtgagtgataat |
52412004 |
T |
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| Q |
208 |
ggtgacagacaagattttggagtcttatgcattgtgtgttttgtctcagcttatattatgtaactttgatttgcttaatgaaaacttttaatttgacagc |
307 |
Q |
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| T |
52412003 |
ggtgactgacagaattttg--gtgttatgcattgtgtgtttggtctgagcttatattatgtgactttgatttgcttaatgaaaactttaaatttgacagt |
52411906 |
T |
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| Q |
308 |
cacattggttaatttgggactatacaaaagtttcaaggtgtaagcatgccaaatttgaaactttattattcttttgtacac |
388 |
Q |
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| T |
52411905 |
caaaatggttaatattgcattacgcaaaaagttcaaggtgtaagcatgccaaatttgaaactttattattcttctgtacac |
52411825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 40393308 - 40393408
Alignment:
| Q |
8 |
gtattatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaagttcttctgctatacaattcactcttattcttgactgcaaattt |
107 |
Q |
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| T |
40393308 |
gtattatcatcaaatcaattgtcctatccaatgttatatgcaatgggaataacaaagttcttttgatatacaatccattcttatccttgactgcaaattt |
40393407 |
T |
|
| Q |
108 |
t |
108 |
Q |
| |
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| |
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| T |
40393408 |
t |
40393408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 8e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 7773627 - 7773808
Alignment:
| Q |
12 |
tatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaa----gttcttctgctatacaattcactcttattcttgactgcaaattt |
107 |
Q |
| |
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||||||||||| || |||||||| ||||||| || | |||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
7773627 |
tatcatcaaattaaatgtactatgcaatattatatgaaatgggaataaaaaaatttcttcttctactatacaattcattcttattcttgactgcaaattt |
7773726 |
T |
|
| Q |
108 |
ttctgctattcttgaatcactgcataaaacttaactgcaacagaaaaacattgtaaagagaaattggtgtgcttttcttcag |
189 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7773727 |
ttctgctattcttgaatcactgcataaaacttaacagcaactaaaaaacattgtaaagagaaattggtgtgcttttcttcag |
7773808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 14677026 - 14676938
Alignment:
| Q |
8 |
gtattatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaagttcttctgctatacaattcactcttattcttg |
96 |
Q |
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||||||||| ||||||||||||||||||||||||| || |||||| |||||| |||||||| || |||||| | ||| |||||||||| |
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| T |
14677026 |
gtattatcaacaaatcaattgtactatccaatattatatgcaatgggaataataaagttctcttgatatacagtccacacttattcttg |
14676938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 17667355 - 17667411
Alignment:
| Q |
12 |
tatcatcaaatcaattgtactatccaatattgtacgcaatgagaataaaaaagttct |
68 |
Q |
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| T |
17667355 |
tatcaacaaatcaattatactatccaatattatatgcaatgggaataataaagttct |
17667411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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