View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0183-INSERTION-8 (Length: 565)
Name: NF0183-INSERTION-8
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0183-INSERTION-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 8 - 565
Target Start/End: Complemental strand, 3598825 - 3598268
Alignment:
| Q |
8 |
atcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcgtgaggtttcctcagttgtagctggccactttatttcaaat |
107 |
Q |
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| T |
3598825 |
atcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcgtgaggtttcctcagttgtagctggccactttatttcaaat |
3598726 |
T |
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| Q |
108 |
acctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccatttacctgctaatgatatcagaatctcctttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598725 |
acctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccatttacctgctaatgatatcagaatctcctttg |
3598626 |
T |
|
| Q |
208 |
cttcttctggaaggcggtcagctttgctgcttacaggggtttctatggcatctggtttctcttctgcgagattttctgcagcaccttgtttgtcatcttc |
307 |
Q |
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| T |
3598625 |
cttcttctggaaggcggtcagctttgctgcttacaggggtttctatggcatctggtttctcttctgcgagattttctgcagcaccttgtttgtcatcttc |
3598526 |
T |
|
| Q |
308 |
acctgctttgtctttcatagcactttcttttccatcatcacctgctgtatcatttatagaattttcggcagcatgtgctttatcactcactaaaacatcc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3598525 |
acctgctttgtctttcatagcactttcttttccatcatcacctgctgtatcatttatagaattttcggcagcatgtgctttatcattcactaaaacatcc |
3598426 |
T |
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| Q |
408 |
gaaccacctaaagtgtcatttacggggttttctgcaccaactgcttggtcttttgcaacatttacaggattttctgccccacctgcttgattgcttatag |
507 |
Q |
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| T |
3598425 |
gaaccacctaaagtgtcatttacggggttttctgcaccaactgcttggtcttttgcaacatttacaggattttctgccccacctgcttgattgcttatag |
3598326 |
T |
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| Q |
508 |
gattttctgtagtaggagtggcctggtttacaggattctcggcaacactagctgcatt |
565 |
Q |
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| T |
3598325 |
gattttctgtagtaggagtggcctggtttacaggattctcggcaacactagctgcatt |
3598268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 15547298 - 15547413
Alignment:
| Q |
105 |
aatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccatttacctgctaatgatatcagaatctcct |
204 |
Q |
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||||||||||| ||||||||||| || ||||| || || | ||| |||||||||| | ||||| ||||||||| |||||||||| ||| ||||| | |
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| T |
15547298 |
aatacctcattggtcattgcccctttaagaggaataacttccaactcatttgcatccaatacattttcccatttatttgctaatgatttcaatatctctt |
15547397 |
T |
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| Q |
205 |
ttgcttcttctggaag |
220 |
Q |
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| T |
15547398 |
ttgcttcatctggaag |
15547413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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