View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0183_high_4 (Length: 443)
Name: NF0183_high_4
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0183_high_4 |
 | |
|
| [»] scaffold0856 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 27659264 - 27659636
Alignment:
| Q |
1 |
ggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgagaagggaggtctgtaatgtttgtgaggcctgtttgtgatttctggtctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27659264 |
ggggtgcagggagtgtttttctgcctgggccttttctgctatctggcctgagaagggaggtctgtg-------------ctgtttgtgatttctggtctg |
27659350 |
T |
|
| Q |
101 |
ctgtttgtgccacccctgttttctggtatgctgtttgtgtttatatatgaacaaagtccatgcttaaattatatttaatgtttttgtttgtgatgcttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27659351 |
ctgtttgtgccacccctgttttctggtatgctgtttgtgtttatat--gaacaaagtccttgcttaaattatatttaatgtttttgtttgtgatgcttac |
27659448 |
T |
|
| Q |
201 |
atttt-ttctgatgtttttgctgcattatatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgatttt |
299 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27659449 |
atttttttctgatgttttagctgcattatatttgatgcaataagcttgtaaatcaccatgtttgcaatataacttattattgatctaattgagtgatttt |
27659548 |
T |
|
| Q |
300 |
gtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27659549 |
gtgcagttttggtgtgccaattgcacccacaattgaaaatttgtggatagttcaaatgctgttttggattgtggtagtattgatgatg |
27659636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 32017285 - 32017413
Alignment:
| Q |
1 |
ggggtgcagggagtgttttt--ctgcatgggccttttctgctatctggcctgagaagggaggtctgtaatgtttgtgaggcctgtttgtgatttctggtc |
98 |
Q |
| |
|
||||||| ||||||||| || |||| ||||| ||||||||||||||||||| |||||||||||| | |||||||||||||| ||| || ||||||||| |
|
|
| T |
32017285 |
ggggtgcggggagtgttgtttactgcctgggctttttctgctatctggcctgggaagggaggtctttgctgtttgtgaggcctttttatgctttctggtc |
32017384 |
T |
|
| Q |
99 |
tgctgtttgtgccacccctgttttctggt |
127 |
Q |
| |
|
||||||||| || ||||| ||||||||| |
|
|
| T |
32017385 |
tgctgtttgcacctccccttttttctggt |
32017413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 37604824 - 37604440
Alignment:
| Q |
1 |
ggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgagaagggaggtctgtaatgtttgtgaggcctgtttgtgatttctggtctg |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37604824 |
ggggtgcagggagtgtttttatggctgggccttttctgctatctggcttgggaagggaggtctgtgctgtttgtgaggcctgtttgtgatttctggtctg |
37604725 |
T |
|
| Q |
101 |
ctgtttgtgccacccctgttttctggtatgctgtttgtgtttatatatgaacaaagtccatgcttaaattatatttaatgtttttgtttgtgatgcttac |
200 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37604724 |
ctgtttgcgcctcccctgttttttggtatgctgtttgtgtttatat--gaacaaagttcatgcttaaattatatttaatgtttttgtttgtgatgcttac |
37604627 |
T |
|
| Q |
201 |
attttttctgatgtttttgctgcattatatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttg |
300 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
37604626 |
gttgtttctgatgtttttgctacattatatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattaagtaattttg |
37604527 |
T |
|
| Q |
301 |
tgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
387 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
37604526 |
tgcagttttggtgtgccaatttcacccacaattgaaaatttatggatagttcaaatgttcttgtggattgtggtagtattgatgatg |
37604440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 38776612 - 38776697
Alignment:
| Q |
227 |
atatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggt |
312 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||||||||| |||||||||||| ||||| ||||| | ||||||||||||||||| |
|
|
| T |
38776612 |
atattcgatgaaataagcttgtaaatctctatgtttgcaacataacttattatagatcttattgacttcttttgtgcagttttggt |
38776697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 387
Target Start/End: Original strand, 5743129 - 5743228
Alignment:
| Q |
288 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
387 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| |||| || |||||||| || ||||||||||||||||| |||||| |
|
|
| T |
5743129 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggatggtccaaatgcttttgtggattgtggtagtattcatgatg |
5743228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 387
Target Start/End: Complemental strand, 33360423 - 33360324
Alignment:
| Q |
288 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
387 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
33360423 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
33360324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 387
Target Start/End: Complemental strand, 670 - 571
Alignment:
| Q |
288 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
387 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
670 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 387
Target Start/End: Complemental strand, 18084699 - 18084600
Alignment:
| Q |
288 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
387 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
18084699 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
18084600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 25542689 - 25542728
Alignment:
| Q |
68 |
tgtttgtgaggcctgtttgtgatttctggtctgctgtttg |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25542689 |
tgtttgtgaggcctgtttgtgttttctggtctgctgtttg |
25542728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23352822 - 23352876
Alignment:
| Q |
1 |
ggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgagaag |
55 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||||||||||| ||||||||| |||| |
|
|
| T |
23352822 |
ggggtgcagggagtatttttattcctgggccttttctgctgtctggcctgggaag |
23352876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 930 times since January 2019
Visitors: 2241