View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0183_high_5 (Length: 435)
Name: NF0183_high_5
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0183_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 404
Target Start/End: Original strand, 1603599 - 1603977
Alignment:
| Q |
30 |
actcaagaccctgagtcaaggacattgcttcttcaaagtatatatgcataactcttttttgttgttattatgtcttgccctatgtagcaccactacttcg |
129 |
Q |
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| T |
1603599 |
actcaagaccctgagtcaaggacattgcttcttcaaagtatatatgcataactcttttttgttgttattatgtgttgccctatgtagcaccactacttcg |
1603698 |
T |
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| Q |
130 |
gaatgtatgcgtgtgtctggtgtccaacattgacatgacac----ggcaacattcatctttttaagttattatagtgtcatgtcttaccacttgaacagg |
225 |
Q |
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| T |
1603699 |
gaatgtatgcgtgtgtctagtgtccaacattgacatgacacacacggccacattcatctttttaaattattatagtgtcatgtcttaccacttgaacagg |
1603798 |
T |
|
| Q |
226 |
tttttagtggttaaattgctaactcaaaaaatgttgtaatgaaaatgtgttatcagaatatttgaagaaaacacaggaaaacaaggtgaaaaatgacaaa |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1603799 |
tttttagtggttaaattgctaactcaaaaaatgttgtaatgaaaatgtgtgatcagaatatttgaagaaaacacaggaaaacaaggagaaaaatgacaaa |
1603898 |
T |
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| Q |
326 |
gaggtaagtaacacacttaaagtggtgtatttaattttatgttgtagtatgtcatattttgtattcaatttaatcacag |
404 |
Q |
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| T |
1603899 |
gaggtaagtaacacactcaaagtggtgtatttaattttatgttgtagtatgtcatatttagtattcaatttaatcacag |
1603977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 267 - 404
Target Start/End: Original strand, 48007232 - 48007370
Alignment:
| Q |
267 |
aaaatgtgttatcagaatatttgaagaaaacacaggaaaacaaggtgaaaaatgacaaagaggtaagtaacacacttaaagtggtgtatttaattttatg |
366 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | || |||| | ||||||||||||||| |
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| T |
48007232 |
aaaatgtgttatcagaatatttgaagaaaacagaggaaaacaaggagaaaaatgacaaagaggtaagtaatgctctaaaagcagggtatttaattttatg |
48007331 |
T |
|
| Q |
367 |
ttgtagtatgtca-tattttgtattcaatttaatcacag |
404 |
Q |
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||||||||||||| ||||| ||||| ||||||||||||| |
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| T |
48007332 |
ttgtagtatgtcattatttagtattgaatttaatcacag |
48007370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 48006976 - 48007119
Alignment:
| Q |
28 |
caactcaagaccctgagtcaaggacattgcttcttcaaagtatatatgcataactcttttttgttgttattatgtc--ttgccctatgtagcaccactac |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||| | || |
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| T |
48006976 |
caactcaagaccctgagtcaaggacattgcttcttcaaagtatatatgcataactcttttttgtacttgttatgtcttttgccttatgtagcaccgccac |
48007075 |
T |
|
| Q |
126 |
ttcggaatgtatgcgtgtgtctggtgtccaacattgacatgaca |
169 |
Q |
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||| |||| |||||||||||| |||| ||||||| |||||| |
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| T |
48007076 |
ttctaaatgaatgcgtgtgtctcgtgtttgacattgatatgaca |
48007119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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