View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0183_low_3 (Length: 444)
Name: NF0183_low_3
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0183_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 27659287 - 27658909
Alignment:
| Q |
2 |
gcagaaaaacactccctgcaccccctaatatagcagcactactacagatagcaaaatagtggaataacttgttctctaagactctgaagtccacacttat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659287 |
gcagaaaaacactccctgcaccccctaatatagcagcactactacagatagcaaaatagtggaataacttgttctctaagactctgaagtccacacttat |
27659188 |
T |
|
| Q |
102 |
gaaatcaattcagcaactatattactacctttctcttcaagattaagaagttacctctcatatataaatactcaactattcacaatttcaacataaatag |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659187 |
gaaatcaattcagcaactatattactacctttctcttaaagattaagaagttccctctcatatataaatactcaactattcacaatttcaacataaatag |
27659088 |
T |
|
| Q |
202 |
gtttcactcgaaacataatctactttctcaaagtacatatcatattcatatctcttnnnnnnnnnnnnnnnnnntactcaattcatcactgacactatat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27659087 |
gtttcactcgaaacataatctactttctcaaagtacatatcatattcatatctcttaaaaagaaggaaaaaaaatactcaattcatcactgacactatat |
27658988 |
T |
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| Q |
302 |
cttttaaattatatgttcaactgtgtttatattcactttcatactgtactcaatgagataacttttccttacaattctt |
380 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27658987 |
cttttaaattatatgttcaagtgtgtttatattcactttcatactgtactcaatgagataacttttccttacaattctt |
27658909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 380
Target Start/End: Original strand, 37604805 - 37605166
Alignment:
| Q |
6 |
aaaaacactccctgcaccccctaatatagcagcactactacagatagcaaaatagtggaataacttgttctctaagactctgaagtccacacttatgaaa |
105 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604805 |
aaaaacactccctgcaccccctaagatagtagcactactacagatagcaaaatagtgaaataacttgttctctaagactctgaagtccacacttatgaaa |
37604904 |
T |
|
| Q |
106 |
tcaattcagcaactatattactacctttctcttcaagattaagaagttacctctcatatataaatactcaactattcacaatttcaacataaataggttt |
205 |
Q |
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||||| || |||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37604905 |
tcaatgcaacaactatattcctacctttctcttcaagattatgaagttccctctcatatataaatactcaactattcacaatttcaacataaagaggttt |
37605004 |
T |
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| Q |
206 |
cactcgaaacataatctactttctcaaagtacatatcatattcatatctcttnnnnnnnnnnnnnnnnnntactcaattcatcactgacactatatcttt |
305 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
37605005 |
cac-----------tctactttctcaaagtacatatcatattcatatctcttaaaaagaagaaaaaaaa--actcaattcatcactgacactatttcttt |
37605091 |
T |
|
| Q |
306 |
taaattatatgttcaactgtgtttatattcactttcatactgtactcaatgagataacttttccttacaattctt |
380 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||| |
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| T |
37605092 |
taaattatatgttcaagtgtgtttacattcactttcatactctactgaatgagataactttttcttacaattctt |
37605166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 25007036 - 25006956
Alignment:
| Q |
161 |
atatataaatactcaactattcacaatttcaacataaataggtttcactcgaaacataatctactttctcaaagtacatat |
241 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||| |
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| T |
25007036 |
atatataaatactcaactattcacattttcaacataaagaggattcattcgaaacataatctactttttcaaagtatatat |
25006956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 25006960 - 25006890
Alignment:
| Q |
311 |
tatatgttcaactgtgtttatattcactttcatactgtactcaatgagataacttttccttacaattcttt |
381 |
Q |
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||||||||||| |||||||| ||||||||||||||| |||| ||| |||| |||||| ||||||||||||| |
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| T |
25006960 |
tatatgttcaagtgtgtttagattcactttcatactctactgaataagatcacttttacttacaattcttt |
25006890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 25007314 - 25007242
Alignment:
| Q |
79 |
aagactctgaagtccacacttatgaaatcaattcagcaactatattactacctttctcttcaagattaagaag |
151 |
Q |
| |
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|||||||||||||||||||||||||||||||| || | ||||||| ||||| || |||||||||||| |||| |
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| T |
25007314 |
aagactctgaagtccacacttatgaaatcaatgcaacgcctatattcctaccattttcttcaagattatgaag |
25007242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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