View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0183_low_6 (Length: 434)
Name: NF0183_low_6
Description: NF0183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0183_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 178 - 424
Target Start/End: Original strand, 52409572 - 52409818
Alignment:
| Q |
178 |
ctatagatattttggaatgaaagtgagttggagatgattcgtcaaagttcagtgtatcaggaaactatttaccaaaagtctcaaattgaaaaggactttt |
277 |
Q |
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| T |
52409572 |
ctatagatattttggaatgaaagtgagttggagatgattcgtcaaagttcagtttatcaggaaactatttaccaaaagtctcaaattgaaaaggactttt |
52409671 |
T |
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| Q |
278 |
tggaaatcaagcctgtgagtactttgcatacttacctgtctattgaatgcatgagttgttttgatccatttacgcgaattatgattctatctatcatata |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409672 |
tggaaatcaagcctgtgagtactttgcatacttacctgtctattgaatgcatgagttgttttgatccatttacgcgaattatgattctatctatcatata |
52409771 |
T |
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| Q |
378 |
ttgcccatgtctgcatttatttgcatgtagttatgcagttggctaga |
424 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409772 |
ttgtccatgtctgcatttatttgcatgtagttatgcagttggctaga |
52409818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 52409401 - 52409507
Alignment:
| Q |
7 |
ctgtcttcccccgcaagccgaaatgcataatacggcaagttttttactttatttatgttgacaaatgtatggtgtaaggcattactataagctattttaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409401 |
ctgtcttcccccgcaagccgaaatgcataatacggcaagttttctactttatttatgttgacaaatgtatggtgtaaggcattactataagctattttaa |
52409500 |
T |
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| Q |
107 |
taccagc |
113 |
Q |
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||||||| |
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| T |
52409501 |
taccagc |
52409507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 47399054 - 47398970
Alignment:
| Q |
183 |
gatattttggaatgaaagtgagttggagatgattcgtcaaagttcagtgtatcaggaaactatttaccaaaagtctcaaattgaa |
267 |
Q |
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||||||| ||||||| |||||||| |||||||| ||| || |||| | ||| ||| |||||||||||| ||||||||||||||| |
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| T |
47399054 |
gatatttaggaatgatggtgagttgaagatgattggtctaatttcaatttattagggaactatttaccataagtctcaaattgaa |
47398970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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