View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0184_high_2 (Length: 259)
Name: NF0184_high_2
Description: NF0184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0184_high_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 32200664 - 32200435
Alignment:
| Q |
30 |
tgtacgacttatgtattagtcaaaaatgacaatgttatacgactaacgtaattctttcctctagatcaagacatgtcctccaagacaaaaattcaaactt |
129 |
Q |
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| T |
32200664 |
tgtacgacttatgtattagtcaaaaatgacaatgttatacgactaacgtaattctttcctctagctcaagacatgttctccaagacaaaaattcaaactt |
32200565 |
T |
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| Q |
130 |
ccttctgctactacctcaacaacaatctcaacattcacgttcacacaagacttatatccagtctcaaagtagtatggcgcaaggaccaatcacttgacca |
229 |
Q |
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| T |
32200564 |
tcttctgctactacctcaacaacaatctcaacattcacgttcacacaagacttatatccagtctcaaagtagtatggcgcaaggaccaatcacttgacca |
32200465 |
T |
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| Q |
230 |
agctatagaacaagataaacgcttcaagca |
259 |
Q |
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| T |
32200464 |
agctatagaacaagataaacgcttcaagca |
32200435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 256
Target Start/End: Original strand, 11337581 - 11337740
Alignment:
| Q |
97 |
aagacatgtcctccaagacaaaaattcaaacttccttctgctactacctcaacaacaatctcaacattcacgttcacacaagacttatatccagtctcaa |
196 |
Q |
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||||||||| ||||||||| ||||| | |||| |||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||| |
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| T |
11337581 |
aagacatgttctccaagaccaaaatcaacacttttttctgctactacctcaacaacaatttcaacctttacaatcacacaagatctatatccagtctcaa |
11337680 |
T |
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| Q |
197 |
agtagtatggcgcaaggaccaatcacttgaccaagctatagaacaagataaacgcttcaa |
256 |
Q |
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| T |
11337681 |
agttgtatggcgcaaggatccatcactagaccaagccatagagcaagataaacgcttcaa |
11337740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 256
Target Start/End: Original strand, 11495600 - 11495759
Alignment:
| Q |
97 |
aagacatgtcctccaagacaaaaattcaaacttccttctgctactacctcaacaacaatctcaacattcacgttcacacaagacttatatccagtctcaa |
196 |
Q |
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||||||||| ||||||||| ||||| | |||| |||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||| |
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| T |
11495600 |
aagacatgttctccaagaccaaaatcaacacttttttctgctactacctcaacaacaatttcaacctttacaatcacacaagatctatatccagtctcaa |
11495699 |
T |
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| Q |
197 |
agtagtatggcgcaaggaccaatcacttgaccaagctatagaacaagataaacgcttcaa |
256 |
Q |
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||| |||||||||||||| | |||||| |||||||| ||||| ||||||||||||||||| |
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| T |
11495700 |
agttgtatggcgcaaggatccatcactagaccaagccatagagcaagataaacgcttcaa |
11495759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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