View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0184_high_3 (Length: 243)
Name: NF0184_high_3
Description: NF0184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0184_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 37979034 - 37978823
Alignment:
| Q |
1 |
tgatggtctaattagaaattctcatggtaagttcaatcttgatctttacaataaatttggatactcctatgctataagggtagaactctggacatttcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37979034 |
tgatggtctaattagaaattctcatggtaagttcaatcttgatctttacaataaatttggatactcctatgttataagggtagaactctggacatttcac |
37978935 |
T |
|
| Q |
101 |
attgaatagttatgagagtcatttgaatatcaaaaatatcatttttaaaatggactctctagttgttgttaatcagttacatctgacccatctcttaatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37978934 |
attgaatagttataagagtcatttgaatatcaaaaatatcatttttaaaatggactctctagttgttgttaatcagttacatctaacccatctcttaatg |
37978835 |
T |
|
| Q |
201 |
catttgtacaac |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
37978834 |
catttgtccaac |
37978823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 770 times since January 2019
Visitors: 2239