View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0185_high_1 (Length: 638)
Name: NF0185_high_1
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0185_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 94 - 629
Target Start/End: Complemental strand, 47886850 - 47886315
Alignment:
| Q |
94 |
gtctcctcttggtaattgtactttgagcgttggaacaggttcaccccgtgttattccaccaatggcaagagactctctcggtcctcatgaacccctgagt |
193 |
Q |
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| T |
47886850 |
gtctcctcttggtaattgtactttgagcgtcggaacaggttcaccccgtgttattccaccaatggcaagagactctctcggtcctcatgaacccctgagc |
47886751 |
T |
|
| Q |
194 |
ggacgttacattcttgtaaccaatcgcacacaaacatatatgggtccttctcagacgatcactgagaaattgaaactctatttaacatatcaagtatctg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47886750 |
ggacgttacattcttgtaaccaatcgcacacaaacatatatgggtccttctcaggcgatcactgagaaattgaaactctatttaacatatcaagtatctg |
47886651 |
T |
|
| Q |
294 |
cttgggtcaggattggttctggatcacatggccctcagaatgttggtattgcctttagtgttgacggccaatgggccaacggaggacagacccaagtttc |
393 |
Q |
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| T |
47886650 |
cttgggtcaggattggttctggatcacatggccctcagaatgttggtattgcctttagtgttgacggccaatgggccaacggaggacagacccaagtttc |
47886551 |
T |
|
| Q |
394 |
tgacagcagatggcatgaaatcggtggttcgtttagaattgaaaagcagccatctaatgtttttgtttacattcaaggtccagtttctggtgttgactta |
493 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47886550 |
tgacagcagatggcatgaaatcagtggttcgtttagaattgaaaagcagccatctaatgtttttgtttacattcaaggtccagtttctggtgttgactta |
47886451 |
T |
|
| Q |
494 |
atggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagatatttatgcgagcagacagacaaggtaacatgataaaatctatgtttat |
593 |
Q |
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| T |
47886450 |
atggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagatatttatgcgagcagacagagaaggtaacatgataaaatctatgtttat |
47886351 |
T |
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| Q |
594 |
tctatgacattaatggagatgcaccgttagtataat |
629 |
Q |
| |
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| T |
47886350 |
tctatgacattaatggagatgcaccgttagtataat |
47886315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 147 - 575
Target Start/End: Original strand, 4622436 - 4622864
Alignment:
| Q |
147 |
ttccaccaatggcaagagactctctcggtcctcatgaacccctgagtggacgttacattcttgtaaccaatcgcacacaaacatatatgggtccttctca |
246 |
Q |
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||||||||||||||||||| ||||| || ||||| | | ||| ||||| || ||||| |||||||| ||| | || ||||| | ||||||||| |||| |
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| T |
4622436 |
ttccaccaatggcaagagaatctcttggacctcacggaatcctaagtggccgctacatacttgtaactaataggactcaaacttggatgggtcctgctca |
4622535 |
T |
|
| Q |
247 |
gacgatcactgagaaattgaaactctatttaacatatcaagtatctgcttgggtcaggattggttctggatcacatggccctcagaatgttggtattgcc |
346 |
Q |
| |
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| |||||| |||||||| || || | ||| || ||||||||||||||||||||| |||||||||| | ||| |||| || |||||||| | ||||| |
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| T |
4622536 |
ggtgatcaccgagaaattaaagctatttttgacttatcaagtatctgcttgggtccggattggttccagttcaaatggaccacagaatgtgaatgttgcc |
4622635 |
T |
|
| Q |
347 |
tttagtgttgacggccaatgggccaacggaggacagacccaagtttctgacagcagatggcatgaaatcggtggttcgtttagaattgaaaagcagccat |
446 |
Q |
| |
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|| ||| |||| || ||| ||| |||||||| ||| | ||||| || |||||||||||||| ||||| || ||||||||||||||||||||| |
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| T |
4622636 |
cttggtgctgacaatcagtggatcaatggaggacaaaccgaggtttcggatgatagatggcatgaaattggtggatcctttagaattgaaaagcagccaa |
4622735 |
T |
|
| Q |
447 |
ctaatgtttttgtttacattcaaggtccagtttctggtgttgacttaatggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagata |
546 |
Q |
| |
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| || || | ||||| || |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||| ||||| | ||||| |||||||| |
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| T |
4622736 |
caaagattatggtttatatccaaggtccagcttctggtgtagacttaatggttgccggacttcaaattttccctgttgatagacatgcaagatttagata |
4622835 |
T |
|
| Q |
547 |
tttatgcgagcagacagacaaggtaacat |
575 |
Q |
| |
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|||| ||||||||||||||| |||| |
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| T |
4622836 |
tttaaagatgcagacagacaaggtgacat |
4622864 |
T |
|
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