View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0185_high_3 (Length: 250)

Name: NF0185_high_3
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0185_high_3
NF0185_high_3
[»] chr8 (17 HSPs)
chr8 (40-101)||(40587695-40587756)
chr8 (37-101)||(25346057-25346121)
chr8 (37-101)||(36776427-36776491)
chr8 (37-101)||(24053937-24054001)
chr8 (37-101)||(41972979-41973043)
chr8 (40-93)||(8760732-8760785)
chr8 (40-93)||(25836268-25836321)
chr8 (40-93)||(1942820-1942873)
chr8 (37-102)||(40616094-40616159)
chr8 (40-91)||(32844182-32844233)
chr8 (43-93)||(8162781-8162831)
chr8 (37-94)||(42245732-42245789)
chr8 (37-101)||(9472175-9472238)
chr8 (48-94)||(45435020-45435066)
chr8 (37-102)||(44389005-44389070)
chr8 (37-101)||(18378802-18378866)
chr8 (54-102)||(25620731-25620779)
[»] chr1 (23 HSPs)
chr1 (40-101)||(38894778-38894839)
chr1 (37-101)||(46626324-46626388)
chr1 (40-101)||(33075659-33075720)
chr1 (37-101)||(19322344-19322408)
chr1 (40-101)||(1826816-1826877)
chr1 (40-101)||(22198910-22198971)
chr1 (37-101)||(47134727-47134791)
chr1 (40-90)||(29844884-29844934)
chr1 (40-90)||(10766220-10766270)
chr1 (43-93)||(28570756-28570806)
chr1 (40-93)||(42678405-42678458)
chr1 (37-102)||(50557849-50557913)
chr1 (37-101)||(16300412-16300476)
chr1 (37-102)||(19400753-19400818)
chr1 (37-101)||(1367314-1367378)
chr1 (37-91)||(52306102-52306156)
chr1 (37-94)||(17364603-17364660)
chr1 (37-102)||(51971272-51971336)
chr1 (37-101)||(4890121-4890185)
chr1 (37-101)||(5426239-5426303)
chr1 (37-101)||(29188300-29188364)
chr1 (37-101)||(33359723-33359787)
chr1 (53-105)||(43116067-43116119)
[»] chr5 (14 HSPs)
chr5 (37-101)||(30754432-30754496)
chr5 (37-101)||(36886968-36887032)
chr5 (40-93)||(6305452-6305505)
chr5 (40-93)||(43138549-43138602)
chr5 (38-102)||(12422345-12422409)
chr5 (38-88)||(42977833-42977883)
chr5 (37-101)||(17643385-17643449)
chr5 (43-93)||(754450-754500)
chr5 (40-93)||(12592471-12592524)
chr5 (37-101)||(3088031-3088095)
chr5 (37-101)||(25698717-25698781)
chr5 (37-101)||(30140525-30140589)
chr5 (37-101)||(33709813-33709877)
chr5 (37-101)||(41689298-41689362)
[»] chr4 (29 HSPs)
chr4 (37-101)||(3757749-3757813)
chr4 (37-101)||(13171648-13171712)
chr4 (37-101)||(50119957-50120021)
chr4 (37-94)||(30529278-30529335)
chr4 (37-101)||(24547354-24547418)
chr4 (38-101)||(51347511-51347574)
chr4 (40-93)||(8956947-8957000)
chr4 (40-93)||(8986919-8986972)
chr4 (40-93)||(37349817-37349870)
chr4 (37-101)||(36743201-36743265)
chr4 (40-90)||(53991554-53991604)
chr4 (37-94)||(17730463-17730520)
chr4 (40-101)||(24948289-24948350)
chr4 (40-101)||(29712393-29712454)
chr4 (37-101)||(3821198-3821262)
chr4 (37-101)||(20588585-20588649)
chr4 (40-90)||(578607-578657)
chr4 (43-93)||(9888895-9888945)
chr4 (44-90)||(35716305-35716351)
chr4 (40-94)||(39406234-39406288)
chr4 (37-101)||(39716717-39716781)
chr4 (54-101)||(5752474-5752521)
chr4 (37-102)||(16896007-16896072)
chr4 (40-93)||(50033712-50033764)
chr4 (53-101)||(35833429-35833477)
chr4 (54-101)||(12682772-12682819)
chr4 (37-91)||(15704144-15704198)
chr4 (40-94)||(43021922-43021976)
chr4 (37-101)||(46104202-46104266)
[»] chr3 (16 HSPs)
chr3 (37-101)||(29530561-29530625)
chr3 (37-101)||(19368941-19369005)
chr3 (37-102)||(28981817-28981882)
chr3 (40-90)||(11955528-11955578)
chr3 (40-101)||(35855227-35855288)
chr3 (37-101)||(8528103-8528167)
chr3 (37-101)||(26102150-26102214)
chr3 (44-90)||(22473678-22473724)
chr3 (37-102)||(40831926-40831991)
chr3 (37-101)||(22519212-22519276)
chr3 (54-101)||(8393586-8393633)
chr3 (54-101)||(18682512-18682559)
chr3 (37-102)||(11602164-11602229)
chr3 (37-101)||(19895645-19895709)
chr3 (54-101)||(4139364-4139411)
chr3 (37-99)||(26777850-26777912)
[»] chr2 (12 HSPs)
chr2 (37-101)||(19486212-19486276)
chr2 (40-101)||(17836990-17837051)
chr2 (37-98)||(19486111-19486172)
chr2 (40-101)||(32677186-32677247)
chr2 (40-90)||(9920912-9920962)
chr2 (37-101)||(10876571-10876633)
chr2 (37-101)||(28607244-28607308)
chr2 (37-101)||(42781034-42781098)
chr2 (37-101)||(2952780-2952844)
chr2 (37-101)||(9545775-9545839)
chr2 (37-101)||(10050189-10050253)
chr2 (57-101)||(18096514-18096558)
[»] chr7 (15 HSPs)
chr7 (40-101)||(29467774-29467835)
chr7 (37-101)||(34872192-34872256)
chr7 (37-94)||(35156995-35157052)
chr7 (40-101)||(44804543-44804604)
chr7 (40-90)||(3791513-3791563)
chr7 (40-93)||(24684636-24684689)
chr7 (37-94)||(29684113-29684170)
chr7 (37-101)||(11840447-11840511)
chr7 (37-101)||(21600970-21601034)
chr7 (37-101)||(39651148-39651212)
chr7 (54-101)||(688086-688133)
chr7 (37-94)||(9143506-9143563)
chr7 (37-101)||(49146122-49146186)
chr7 (37-101)||(17169047-17169111)
chr7 (37-101)||(48529933-48529997)
[»] scaffold0385 (1 HSPs)
scaffold0385 (40-93)||(8303-8356)
[»] chr6 (10 HSPs)
chr6 (40-101)||(4897497-4897558)
chr6 (37-101)||(9737752-9737816)
chr6 (54-101)||(6969312-6969359)
chr6 (37-102)||(25529263-25529328)
chr6 (37-102)||(33328277-33328342)
chr6 (37-101)||(9981259-9981323)
chr6 (37-94)||(24443957-24444014)
chr6 (37-102)||(35133196-35133260)
chr6 (37-101)||(1218541-1218605)
chr6 (37-101)||(4107977-4108041)
[»] scaffold0009 (2 HSPs)
scaffold0009 (40-101)||(225458-225519)
scaffold0009 (38-101)||(108570-108633)
[»] scaffold0381 (1 HSPs)
scaffold0381 (43-93)||(9600-9650)
[»] scaffold0057 (1 HSPs)
scaffold0057 (37-101)||(20579-20643)
[»] scaffold0051 (1 HSPs)
scaffold0051 (37-101)||(62085-62149)
[»] scaffold0759 (1 HSPs)
scaffold0759 (54-93)||(5908-5947)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 40587695 - 40587756
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  40587695 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaatggacat 40587756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 25346121 - 25346057
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  25346121 ctcaaccaataagtagattaccaaattgccccttatagaggcaaaatggtaaattcaatggacat 25346057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 36776491 - 36776427
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  36776491 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 36776427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 24054001 - 24053937
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||    
T  24054001 ctcaaccaataagtagattaccaaattgccccttataggagcaaaatggtaaattcaagggacat 24053937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 41973043 - 41972979
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  41973043 ctcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 41972979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 8760785 - 8760732
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  8760785 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattca 8760732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 25836268 - 25836321
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  25836268 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattca 25836321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 1942873 - 1942820
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  1942873 aaccaataagtagattaccaaattgccccttatagaggcaaaatggtaaattca 1942820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 40616094 - 40616159
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| ||||||||||||||||||| | ||||||  ||||||||||||||||| |||||||    
T  40616094 ctcaaccaattagtagattaccaaattgcctcttataggagcaaaatggtaaattcaagggacatg 40616159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 32844233 - 32844182
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaatt 91  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  32844233 aaccaataagtagattaccaaattgccccttatcggggcaaaatggtaaatt 32844182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 8162781 - 8162831
Alignment:
Q  43 caataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  8162781 caataagtagattaccaaattgacccttataggggcaaaatggtaaattca 8162831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 42245732 - 42245789
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||||||||||||||||||| |||||| |||| ||||||| ||||||||| |||||||    
T  42245732 ctcaaccaataagtagattatcaaattaccccttataggggcaaaatggtgaattcaa 42245789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 9472238 - 9472175
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||| ||| ||||| | ||||||||||| ||||| ||||||    
T  9472238 ctcaaccaataagtagattaccaaattg-cccttatagaggcaaaatggtaatttcaagggacat 9472175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 45435066 - 45435020
Alignment:
Q  48 agtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||    
T  45435066 agtagattaccaaattgccccttataagggcaaaatggtaaattcaa 45435020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 44389005 - 44389070
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| | |||||||||||||| |||| |||| ||  |||||||||||||||| |||||||    
T  44389005 ctcaaccaattaatagattaccaaattaccccttataagggaaaaatggtaaattcaagggacatg 44389070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 18378802 - 18378866
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||| ||  |||||||||||||||  |||| | ||||||| ||||||||| ||||||    
T  18378802 ctcaaccaataattaatttaccaaattgcccctaatagaggcaaaatgataaattcaaaggacat 18378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 25620731 - 25620779
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||||||||  |||||| |||||| ||||| ||||||||||||    
T  25620731 ttaccaaattgcccctcataggggcaaaatagtaaaatcaatggacatg 25620779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 38894839 - 38894778
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  38894839 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaatggacat 38894778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 46626324 - 46626388
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  46626324 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 46626388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 33075659 - 33075720
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  33075659 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 33075720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 19322344 - 19322408
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  19322344 ctcaaccaataagtagaataccaaattgccccttataggggcaaaatggtaaattcaagggacat 19322408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 1826877 - 1826816
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  1826877 aaccaataaatagattaccaaattgccccttatagagccaaaatggtaaattcaagggacat 1826816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 22198910 - 22198971
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  22198910 aaccaataagtagattaccaaattgccccttataggggcaaaatgataaattcaagggacat 22198971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 47134791 - 47134727
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| ||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  47134791 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacat 47134727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 29844884 - 29844934
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  29844884 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaat 29844934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 10766270 - 10766220
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  10766270 aaccaataagtagattaccaaattgacccttataggggcaaaatggtaaat 10766220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 28570806 - 28570756
Alignment:
Q  43 caataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  28570806 caataagtagattaccaaattgacccttataggggcaaaatggtaaattca 28570756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 42678458 - 42678405
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||| ||||||||||| |||||||  |||||||||||||||    
T  42678458 aaccaataagtagattatcaaattgccccttatagggataaaatggtaaattca 42678405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 50557913 - 50557849
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| ||||||||||||||||||||| |||| || ||||||||||||||||  |||||||    
T  50557913 ctcaaccaattagtagattaccaaattgccccttata-ggacaaaatggtaaattcatgggacatg 50557849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 16300476 - 16300412
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| ||||  ||||||||||||||| ||||||  ||||||||||||||||| ||||||    
T  16300476 ctcaaccaattagtaatttaccaaattgccccttataggagcaaaatggtaaattcaagggacat 16300412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 19400818 - 19400753
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| | ||||||||| |||| |||| |||| || ||||||||||||||||| |||||||    
T  19400818 ctcaaccaattaatagattaccgaattaccccttatatgggcaaaatggtaaattcaagggacatg 19400753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 1367378 - 1367314
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  |||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  1367378 ctcagccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacat 1367314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 52306156 - 52306102
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaatt 91  Q
    |||||||||| ||||  ||| ||||||||||| ||||||| ||||||||||||||    
T  52306156 ctcaaccaattagtaatttatcaaattgccccttataggggcaaaatggtaaatt 52306102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 17364603 - 17364660
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||| ||||||| ||  |||||||||||||||  |||||| |||||||||||||||||    
T  17364603 ctcagccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaa 17364660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 51971272 - 51971336
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| | |||||||||||||| |||  ||||||| ||||||||||| ||||| |||||||    
T  51971272 ctcaaccaattaatagattaccaaattaccct-tatagggacaaaatggtaacttcaagggacatg 51971336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 4890185 - 4890121
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  |||||||||||||||  |||| | ||||||||||||||||| ||||||    
T  4890185 ctcagccaataattaatttaccaaattgcccctaatagaggcaaaatggtaaattcaaaggacat 4890121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 5426303 - 5426239
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||  |||  ||||||||||||||| | || || |||||||||||| |||||||||||    
T  5426303 ctcaaccaatttgtaatttaccaaattgccccttctaagggcaaaatggtaaaatcaatggacat 5426239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 29188300 - 29188364
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  ||||||||||||||   |||||| ||||||||||||||||| ||||||    
T  29188300 ctcagccaataattaatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacat 29188364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 33359787 - 33359723
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  ||||||||||||||   |||||| ||||||||||||||||| ||||||    
T  33359787 ctcagccaataattaatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacat 33359723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 43116119 - 43116067
Alignment:
Q  53 attaccaaattgccccatatagggccaaaatggtaaattcaatggacatgtat 105  Q
    ||||||||||||||||   ||||| |||||| | |||||||||||||||||||    
T  43116119 attaccaaattgcccctcctaggggcaaaattggaaattcaatggacatgtat 43116067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 30754496 - 30754432
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  30754496 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaaaggacat 30754432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 36886968 - 36887032
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  36886968 ctcaatcaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 36887032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 6305452 - 6305505
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  6305452 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattca 6305505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 43138549 - 43138602
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  43138549 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattca 43138602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 12422345 - 12422409
Alignment:
Q  38 tcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||| |||||||    
T  12422345 tcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaaatcaaaggacatg 12422409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 42977833 - 42977883
Alignment:
Q  38 tcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaa 88  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  42977833 tcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaa 42977883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 17643385 - 17643449
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||| ||||||||||||||||||| |||| || ||||||| ||||||||| ||||||    
T  17643385 ctcaaccaataaatagattaccaaattgccccttataagggcaaaatgataaattcaagggacat 17643449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 754450 - 754500
Alignment:
Q  43 caataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  754450 caataagtagattaccaaattgacccttataggggcaaaatggtaaattca 754500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 12592471 - 12592524
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| |||||||  ||| |||||||||||    
T  12592471 aaccaataagtagattaccaaattgccccttataggggtaaactggtaaattca 12592524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 3088031 - 3088095
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| | ||  ||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  3088031 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 3088095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 25698717 - 25698781
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||| ||  |||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  25698717 ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacat 25698781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 30140589 - 30140525
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| ||||  |||||||||| |||   |||||| ||||||||||||||||| ||||||    
T  30140589 ctcaaccaattagtaatttaccaaattacccttaataggggcaaaatggtaaattcaaaggacat 30140525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 33709813 - 33709877
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| | ||  ||||||||||||||  |||||||  |||||||||||||||| ||||||    
T  33709813 ctcaaccaattactaatttaccaaattgccctttataggggtaaaatggtaaattcaagggacat 33709877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 41689362 - 41689298
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  ||||||||||||||   |||||| ||||||||||||||||| ||||||    
T  41689362 ctcagccaataattaatttaccaaattgcccataataggggcaaaatggtaaattcaaaggacat 41689298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 3757813 - 3757749
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  3757813 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaatgaacat 3757749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 13171712 - 13171648
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  13171712 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 13171648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 50119957 - 50120021
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  50119957 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 50120021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 30529278 - 30529335
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30529278 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaa 30529335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 24547418 - 24547354
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  24547418 ctcaaccaataaatagattaccaaattgccccttatagggacaaaatggtaaattcaagggacat 24547354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 51347574 - 51347511
Alignment:
Q  38 tcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  51347574 tcaaccaataaatagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 51347511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 8957000 - 8956947
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  8957000 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattca 8956947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 8986972 - 8986919
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  8986972 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattca 8986919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 37349870 - 37349817
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  37349870 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattca 37349817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 36743201 - 36743265
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||| | |||||||||||||| || ||||||    
T  36743201 ctcaaccaataagtagattaccaaattgccccttatagagacaaaatggtaaatttaagggacat 36743265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 53991554 - 53991604
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  53991554 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaat 53991604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 17730520 - 17730463
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  17730520 ctcaaccaattagtagattaccaaattgccccttataggagcaaaatggtaaattcaa 17730463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 24948289 - 24948350
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||| |||||||||||| ||||||  ||||||||||||||||| ||||||    
T  24948289 aaccaataagtagatttccaaattgccccttataggagcaaaatggtaaattcaaaggacat 24948350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 29712454 - 29712393
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||||||||| || ||||||    
T  29712454 aaccaataaatagattaccaaattgccccttataggggcaaaatggtaaatttaagggacat 29712393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 3821198 - 3821262
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| ||||  ||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  3821198 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 3821262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 20588649 - 20588585
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||| ||||||||||||||||| ||||| | ||||||||| ||||||| ||||||    
T  20588649 ctcaaccaataagtggattaccaaattgccccttatagaggcaaaatggtgaattcaagggacat 20588585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 578607 - 578657
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  578607 aaccaataagtagattaccaaattgtcccttataggggcaaaatggtaaat 578657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 9888895 - 9888945
Alignment:
Q  43 caataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  9888895 caataagtagattaccaaattgacccttataggggcaaaatggtaaattca 9888945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 35716305 - 35716351
Alignment:
Q  44 aataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  35716305 aataagtagattaccaaattgccccttataggggcaaaatggtaaat 35716351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 39406234 - 39406288
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||||||||||||||||||||||| |||| ||||||| | |||||||||||||||    
T  39406234 aaccaataagtagattaccaaattaccccttataggggctaaatggtaaattcaa 39406288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 39716717 - 39716781
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||| ||  |||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  39716717 ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacat 39716781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 5752521 - 5752474
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  5752521 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 5752474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 16896072 - 16896007
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| | ||||||||||||| ||||| |||| || |||||| |||||||||| |||||||    
T  16896072 ctcaaccaattaatagattaccaaatagccccttataagggcaaaattgtaaattcaagggacatg 16896007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 50033764 - 50033712
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  50033764 aaccaataagtagattaccaaattg-cccttataagggcaaaatggtaaattca 50033712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 35833429 - 35833477
Alignment:
Q  53 attaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||  |||||| |||||||||||| |||||||||||    
T  35833429 attaccaaattgcccctcataggggcaaaatggtaaaatcaatggacat 35833477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 12682772 - 12682819
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||  |||||| |||||||||||| |||||||||||    
T  12682772 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacat 12682819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 15704198 - 15704144
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaatt 91  Q
    |||||||||| ||||  |||||||||| |||| ||||||| ||||||||||||||    
T  15704198 ctcaaccaattagtaatttaccaaatttccccttataggggcaaaatggtaaatt 15704144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 43021976 - 43021922
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||||||||||||||||||||||||| ||  |||| | ||| |||||||||||||    
T  43021976 aaccaataagtagattaccaaattgcacctaatagaggcaagatggtaaattcaa 43021922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 46104266 - 46104202
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||  |||  |||||||||||||||  || ||| |||||||||||| |||||||||||    
T  46104266 ctcaaccaatttgtaatttaccaaattgcccctcattggggcaaaatggtaaaatcaatggacat 46104202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 29530561 - 29530625
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  29530561 ctcaaccaataagtagattaccaaattgccccttatagggacaaaatggtaaattcaagggacat 29530625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 19368941 - 19369005
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||    
T  19368941 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaaatcaagggacat 19369005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 28981817 - 28981882
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  28981817 ctcaaccaattagttgattaccaaattgccccttataggggcaaaatggtaaattcaagggacatg 28981882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 11955528 - 11955578
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  11955528 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaat 11955578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 35855288 - 35855227
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||||||||| || ||||||    
T  35855288 aaccaataaatagattaccaaattgccccttataggggcaaaatggtaaatttaagggacat 35855227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 8528103 - 8528167
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||| || |||||||||||||||| ||||||| || |||||||||||||| ||||||    
T  8528103 ctcaaccaataaatatattaccaaattgccccttatagggacagaatggtaaattcaagggacat 8528167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 26102150 - 26102214
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||| ||||||||||||| || | ||||||| ||||||||||||||||| ||||||    
T  26102150 ctcaaccaataagcagattaccaaattacctcttataggggcaaaatggtaaattcaaaggacat 26102214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 22473724 - 22473678
Alignment:
Q  44 aataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  22473724 aataagtagattaccaaattgccccttataggggcaaaatggtaaat 22473678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 40831926 - 40831991
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| ||||||||||| ||||| ||| ||||||  ||||||||||||||||| |||||||    
T  40831926 ctcaaccaattagtagattaccgaattgtcccttataggagcaaaatggtaaattcaagggacatg 40831991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 22519276 - 22519212
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| | ||  |||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  22519276 ctcaaccaattaataatttactaaattgccccttataggggcaaaatggtaaattcaatggacat 22519212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 8393633 - 8393586
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  8393633 ttaccaaattgccccttataggggcaaaatggtaaattcaaaggacat 8393586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 18682559 - 18682512
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  18682559 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 18682512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 11602164 - 11602229
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| | ||||||||  ||||||||| ||||||| |||||||||||| |||| |||||||    
T  11602164 ctcaaccaattaatagattactgaattgccccttataggggcaaaatggtaaaatcaacggacatg 11602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 19895645 - 19895709
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| | ||  ||||||||||||||  |||| || ||||||||||||||||||||||||    
T  19895645 ctcaaccaattactaatttaccaaattgccctttataagggcaaaatggtaaattcaatggacat 19895709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 4139364 - 4139411
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||  |||||| |||||||||||| |||||||||||    
T  4139364 ttaccaaattgcccctaatagggacaaaatggtaaaatcaatggacat 4139411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 26777850 - 26777912
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggac 99  Q
    ||||||||||  |||  |||||||||||||||  |||||| |||||||||||| |||||||||    
T  26777850 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggac 26777912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 19486276 - 19486212
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  19486276 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 19486212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 17837051 - 17836990
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  17837051 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 17836990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 19486111 - 19486172
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatgga 98  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  19486111 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatgataaattcaatgga 19486172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 32677186 - 32677247
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  32677186 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 32677247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 9920912 - 9920962
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  9920912 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaat 9920962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 10876571 - 10876633
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||| ||||||    
T  10876571 ctcaaccaataagtagattaccaaattgcccc--ttaggggcaaaatggtaaattcaagggacat 10876633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 28607308 - 28607244
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||  |||  ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  28607308 ctcaaccaatttgtaatttaccaaattgccccttatagggacaaaatggtaaattcaatggacat 28607244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 42781098 - 42781034
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||| ||||||||||||||||||| || |||| ||||||| ||||||||| ||||||    
T  42781098 ctcaaccaataaatagattaccaaattgccccttacagggacaaaatgataaattcaagggacat 42781034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 2952844 - 2952780
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  |||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  2952844 ctcagccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacat 2952780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 9545775 - 9545839
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  |||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  9545775 ctcagccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacat 9545839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 10050189 - 10050253
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| ||||  ||| |||||||||||  |||||| ||||||||||||||||| ||||||    
T  10050189 ctcaaccaattagtaatttatcaaattgcccctaataggggcaaaatggtaaattcaaaggacat 10050253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 18096558 - 18096514
Alignment:
Q  57 ccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||| |||| ||||||| ||||||||||||||||| ||||||    
T  18096558 ccaaattaccccttataggggcaaaatggtaaattcaaaggacat 18096514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 29467835 - 29467774
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  29467835 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 29467774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 34872256 - 34872192
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||    
T  34872256 ctcaaccaataagtagattaccaaattgccccttatagggacaaaatggtaagttcaaaggacat 34872192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 35156995 - 35157052
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  35156995 ctcaaccgataagtagattaccaaattgccccttataggggcaaaatggtaaattcaa 35157052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 44804604 - 44804543
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  44804604 aaccaataaatagattaccaaattgccccttatagggacaaaatggtaaattcaagggacat 44804543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 3791563 - 3791513
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaat 90  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  3791563 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaat 3791513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 24684636 - 24684689
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  24684636 aaccaataagtagattaccaaattgccccttatagaggcaaaatggtaaattca 24684689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 29684113 - 29684170
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||||||||| ||||||||||||||||||||| |||||||  ||||||||||||||||    
T  29684113 ctcaaccaattagtagattaccaaattgccccttataggggtaaaatggtaaattcaa 29684170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 11840447 - 11840511
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| | ||  ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  11840447 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacat 11840511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 21600970 - 21601034
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| | ||  ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  21600970 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacat 21601034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 39651148 - 39651212
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| ||||  |||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  39651148 ctcaaccaattagtaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacat 39651212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 688133 - 688086
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  688133 ttaccaaattgccccttataggggcaaaatggtaaattcaaaggacat 688086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 9143563 - 9143506
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||||| ||| ||||  ||||||||||||||| ||||||| |||||||||||||||||    
T  9143563 ctcaacaaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaa 9143506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 49146122 - 49146186
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||  |||  |||||||||||||||  |||||| |||||||||||| |||||||||||    
T  49146122 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacat 49146186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 17169111 - 17169047
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  ||||||||||||||   |||||| ||||||||||||||||| ||||||    
T  17169111 ctcagccaataattaatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacat 17169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 48529933 - 48529997
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  |||||||||||||||  |||||| ||||||||||| ||||| ||||||    
T  48529933 ctcagccaataattaatttaccaaattgcccccaataggggcaaaatggtaatttcaaaggacat 48529997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 8303 - 8356
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  8303 aaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattca 8356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 4897497 - 4897558
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  4897497 aaccaataaatagattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 4897558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 9737752 - 9737816
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||    
T  9737752 ctcaaccaataaatagattatcaaattgccccttatagggacaaaatggtaaattcaagggacat 9737816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 6969312 - 6969359
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  6969312 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 6969359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 25529328 - 25529263
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| ||||||||||||||||||||| ||||||  |||||| |||||  ||| |||||||    
T  25529328 ctcaaccaattagtagattaccaaattgccccttataggagcaaaatcgtaaaagcaacggacatg 25529263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 33328277 - 33328342
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| |||||| |||||||||||||| | ||||  |||||||||||||| || |||||||    
T  33328277 ctcaaccaattagtagactaccaaattgccccttgtaggagcaaaatggtaaatttaaaggacatg 33328342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 9981259 - 9981323
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| || |  ||||||||||||||| |||||||  |||||||||||||||||| ||||    
T  9981259 ctcaaccaattagcaatttaccaaattgccccttataggggtaaaatggtaaattcaatgaacat 9981323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 24444014 - 24443957
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaa 94  Q
    |||| ||||||| ||  |||||||||||||||  |||||| |||||||||||||||||    
T  24444014 ctcagccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaa 24443957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 35133260 - 35133196
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacatg 102  Q
    |||||||||| ||||||||| ||||||||||  ||||| | |||||||||||||| || |||||||    
T  35133260 ctcaaccaattagtagattatcaaattgccct-tatagaggcaaaatggtaaatttaaaggacatg 35133196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 1218605 - 1218541
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  ||||||||||||||   |||||| ||||||||||||||||| ||||||    
T  1218605 ctcagccaataattaatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacat 1218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 4108041 - 4107977
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||  |||  |||||||||||||||  ||||||  ||||||||||| |||||||||||    
T  4108041 ctcaaccaatttgtaatttaccaaattgcccctcataggggaaaaatggtaaaatcaatggacat 4107977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 225519 - 225458
Alignment:
Q  40 aaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||| ||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  225519 aaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacat 225458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 108633 - 108570
Alignment:
Q  38 tcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||||||||| ||||||||||||||| |||| ||| ||| ||||||||||||||||| ||||||    
T  108633 tcaaccaatacgtagattaccaaattaccccttatggggacaaaatggtaaattcaagggacat 108570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 9650 - 9600
Alignment:
Q  43 caataagtagattaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  9650 caataagtagattaccaaattgacccttataggggcaaaatggtaaattca 9600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 20579 - 20643
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    |||| ||||||| ||  |||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  20579 ctcagccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacat 20643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 62149 - 62085
Alignment:
Q  37 ctcaaccaataagtagattaccaaattgccccatatagggccaaaatggtaaattcaatggacat 101  Q
    ||||||||||  |||  |||||||||||||||  |||||| |||||||||||| |||||||||||    
T  62149 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacat 62085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 5908 - 5947
Alignment:
Q  54 ttaccaaattgccccatatagggccaaaatggtaaattca 93  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  5908 ttaccaaattgccccttataggggcaaaatggtaaattca 5947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 751 times since January 2019
Visitors: 2238