View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0185_low_11 (Length: 309)
Name: NF0185_low_11
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0185_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 517300 - 517447
Alignment:
| Q |
88 |
catacaaacaatgaaaggtgctttcacacgtgagataacctacacaggttgcgtctatggtgttgctggacaatactacaaggacatggatttctccaaa |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
517300 |
catacaaacaatgaaaggtgctttcacacgtgagataacctacacaggttgcgtctatggtgttgctggacaatactacaaggacatggatttctccaaa |
517399 |
T |
|
| Q |
188 |
gtaattaattgtcnnnnnnntcctgtaataagtgatttgcctccagaa |
235 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
517400 |
gtaattaattgtcaaaaaaatcctgtaataagtgatttgcctccagaa |
517447 |
T |
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