View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0185_low_14 (Length: 259)

Name: NF0185_low_14
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0185_low_14
NF0185_low_14
[»] chr5 (10 HSPs)
chr5 (50-176)||(30800893-30801019)
chr5 (171-237)||(30801044-30801110)
chr5 (101-173)||(17064801-17064873)
chr5 (101-153)||(34208449-34208501)
chr5 (101-175)||(36124452-36124527)
chr5 (101-159)||(28906875-28906933)
chr5 (101-159)||(28943270-28943328)
chr5 (101-174)||(4068036-4068109)
chr5 (101-146)||(36104833-36104878)
chr5 (115-151)||(35796041-35796077)
[»] scaffold0025 (1 HSPs)
scaffold0025 (101-175)||(65729-65804)
[»] chr1 (16 HSPs)
chr1 (101-153)||(38851975-38852027)
chr1 (110-175)||(45416130-45416195)
chr1 (101-176)||(6213473-6213549)
chr1 (101-173)||(17058759-17058831)
chr1 (114-169)||(10842013-10842068)
chr1 (101-175)||(13773221-13773296)
chr1 (101-159)||(15390289-15390348)
chr1 (101-175)||(22563439-22563514)
chr1 (101-159)||(16661322-16661380)
chr1 (106-175)||(32589436-32589506)
chr1 (101-143)||(48897059-48897101)
chr1 (101-153)||(36754422-36754475)
chr1 (101-165)||(40375257-40375322)
chr1 (101-153)||(33133873-33133925)
chr1 (114-174)||(47469029-47469089)
chr1 (101-153)||(50119047-50119099)
[»] scaffold0179 (1 HSPs)
scaffold0179 (101-159)||(6046-6105)
[»] chr4 (13 HSPs)
chr4 (101-159)||(39023244-39023303)
chr4 (101-175)||(55238441-55238516)
chr4 (101-175)||(56479170-56479244)
chr4 (101-153)||(29406432-29406484)
chr4 (101-175)||(626924-626999)
chr4 (101-159)||(45849116-45849175)
chr4 (101-139)||(9735073-9735111)
chr4 (101-175)||(40486494-40486568)
chr4 (101-174)||(55055970-55056043)
chr4 (101-153)||(5497226-5497278)
chr4 (101-153)||(17872162-17872214)
chr4 (101-164)||(26919410-26919474)
chr4 (101-153)||(45312199-45312251)
[»] chr2 (10 HSPs)
chr2 (101-159)||(27913412-27913471)
chr2 (101-143)||(2289696-2289738)
chr2 (101-175)||(13773453-13773528)
chr2 (101-175)||(3286999-3287073)
chr2 (107-143)||(7907491-7907527)
chr2 (101-153)||(27444334-27444386)
chr2 (101-153)||(28819548-28819600)
chr2 (101-176)||(40688581-40688657)
chr2 (101-153)||(41185403-41185455)
chr2 (101-153)||(43214429-43214481)
[»] chr8 (13 HSPs)
chr8 (101-143)||(11710370-11710412)
chr8 (101-151)||(18412633-18412683)
chr8 (101-175)||(23178833-23178908)
chr8 (101-175)||(43085165-43085240)
chr8 (101-175)||(22274554-22274628)
chr8 (101-175)||(24458370-24458444)
chr8 (101-165)||(94453-94518)
chr8 (101-153)||(6511458-6511511)
chr8 (101-181)||(39169532-39169613)
chr8 (101-204)||(7381810-7381909)
chr8 (101-176)||(8265320-8265396)
chr8 (105-153)||(15856453-15856501)
chr8 (101-153)||(43847010-43847062)
[»] chr7 (7 HSPs)
chr7 (101-153)||(47194367-47194419)
chr7 (101-159)||(4232286-4232344)
chr7 (101-143)||(25833641-25833683)
chr7 (101-158)||(27424909-27424966)
chr7 (117-165)||(7778955-7779003)
chr7 (101-153)||(12935815-12935867)
chr7 (101-153)||(21066961-21067013)
[»] chr6 (3 HSPs)
chr6 (101-153)||(17534922-17534974)
chr6 (101-159)||(30248-30307)
chr6 (101-139)||(29284356-29284394)
[»] chr3 (7 HSPs)
chr3 (101-175)||(2007025-2007100)
chr3 (101-159)||(53752642-53752701)
chr3 (101-175)||(44764773-44764847)
chr3 (102-143)||(882475-882516)
chr3 (124-169)||(40192215-40192260)
chr3 (101-173)||(42268839-42268912)
chr3 (101-153)||(44685111-44685163)
[»] scaffold0246 (1 HSPs)
scaffold0246 (101-175)||(24433-24507)
[»] scaffold0690 (1 HSPs)
scaffold0690 (101-176)||(3718-3794)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 30800893 - 30801019
Alignment:
Q  50 tacttcttataaatcaattgagaattaaaaaattatataatttnnnnnnnntttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaag 149  Q
    |||||||||||||||||||||||||| |||||||||||| |||        |||||||||||| | ||||||||||||||| ||| ||||||||||| ||    
T  30800893 tacttcttataaatcaattgagaatttaaaaattatatagtttaaactttttttttgtcaagtagtctagtggttagaactcacagaattaaatgtggag 30800992  T
Q  150 aagttgagtgaccgggattcaaaccct 176  Q
    |||||||||| ||||| ||||||||||    
T  30800993 aagttgagtgtccggggttcaaaccct 30801019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 30801044 - 30801110
Alignment:
Q  171 aaccctagcaactgaactaagcttatggggatatataatttaaactttatcaaaatcaaatatgaat 237  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  30801044 aaccctagcaactgaactaagtttatgggaatatataatttaaactttatcaaaatcaaatatgaat 30801110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 17064801 - 17064873
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaac 173  Q
    |||| ||||||| ||||||||| ||||||| ||||||||||||||| |||||| | ||| ||||| |||||||    
T  17064801 ttttggtcaagtagcctagtggctagaactcacacaattaaatgtggagaagtggggtgtccggggttcaaac 17064873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 34208501 - 34208449
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| ||||||||| ||||||| |||||||||| |||| ||||||    
T  34208501 tttttgtcaagtagcctagtggctagaactcacacaattaattgtggagaagt 34208449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 36124527 - 36124452
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| | |||||||||||| || ||||| ||||| |||| |||||| ||||| ||||||||| |||||    
T  36124527 tttttgtcaagtagtctagtggttagagctcacacagttaaattgtggagaagtggagtgtccgggattcgaaccc 36124452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 28906933 - 28906875
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtg 159  Q
    |||||||| ||| ||||| |||||||| | |||||||||||||||| |||||| |||||    
T  28906933 tttttgtctagtagcctattggttagagcatacacaattaaatgtggagaagtggagtg 28906875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 28943328 - 28943270
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtg 159  Q
    |||||||| ||| ||||| |||||||| | |||||||||||||||| |||||| |||||    
T  28943328 tttttgtctagtagcctattggttagagcatacacaattaaatgtggagaagtggagtg 28943270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 4068109 - 4068036
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaacc 174  Q
    |||||||||||| || |||||||| || || ||||||||||||||| |||||| | ||| ||||| ||| ||||    
T  4068109 tttttgtcaagtagcgtagtggttggagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacc 4068036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 36104878 - 36104833
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtg 146  Q
    |||||||||||| | | ||||||||||||| |||||||||||||||    
T  36104878 tttttgtcaagtagtccagtggttagaactcacacaattaaatgtg 36104833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 35796077 - 35796041
Alignment:
Q  115 cctagtggttagaacttacacaattaaatgtgaagaa 151  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  35796077 cctagtggttagagcttacacaattaaatgtggagaa 35796041  T

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Target: scaffold0025 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 65729 - 65804
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  65729 tttttgtcaagtagcctagtgattagagctcacacaattaaattgtgaagaagtggagtgtccgggattcgaaccc 65804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 38851975 - 38852027
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||    
T  38851975 tttttgtcaagtagcctagtggctagaactcacacaattaaatgtggagaagt 38852027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 45416130 - 45416195
Alignment:
Q  110 agttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    ||||||||||||||||||  | ||||||||||||||| |||||| | ||| ||||||||| |||||    
T  45416130 agttgcctagtggttagagttcacacaattaaatgtggagaagtggggtgtccgggattcgaaccc 45416195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 6213549 - 6213473
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccct 176  Q
    |||||||||||| | ||||||| ||||||| |||||| |||| ||||||||||| | ||  ||||||||||||||||    
T  6213549 tttttgtcaagtagtctagtggctagaactcacacaatttaattgtgaagaagtggggtatccgggattcaaaccct 6213473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 17058831 - 17058759
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaac 173  Q
    |||||||  ||| |||||||||||||| || |||||||||| |||| |||||| | ||| |||||||||||||    
T  17058831 tttttgtttagtagcctagtggttagagctcacacaattaattgtggagaagtggggtgtccgggattcaaac 17058759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 10842013 - 10842068
Alignment:
Q  114 gcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattc 169  Q
    ||||||||| |||| ||||||||||||||| || |||||| ||||| |||||||||    
T  10842013 gcctagtggatagagcttacacaattaaatatggagaagtggagtgtccgggattc 10842068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 13773296 - 13773221
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| ||||||||| |||| || |||||| |||| |||| |||||| ||||| ||||||||| |||||    
T  13773296 tttttgtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggagtgtccgggattcgaaccc 13773221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 15390348 - 15390289
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 159  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||| |||||    
T  15390348 tttttgtcaagtagcctagtggctagaactcacacaattaaattgtggagaagtggagtg 15390289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 22563514 - 22563439
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| ||||||||| |||| || ||||||||||| |||| |||||| ||||| ||||| ||| |||||    
T  22563514 tttttgtcaagtagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtccggggttcgaaccc 22563439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 16661380 - 16661322
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtg 159  Q
    |||||||| ||| ||||| |||||||| | |||||||||||||||| |||||| |||||    
T  16661380 tttttgtctagtagcctattggttagagcatacacaattaaatgtggagaagtggagtg 16661322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 32589436 - 32589506
Alignment:
Q  106 gtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    ||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||||||||| ||| |||||    
T  32589436 gtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggagtgaccggggttcgaaccc 32589506  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 48897059 - 48897101
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaat 143  Q
    |||||||||||| |||||||||||||| || ||||||||||||    
T  48897059 tttttgtcaagtagcctagtggttagagctcacacaattaaat 48897101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 36754475 - 36754422
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacaca-attaaatgtgaagaagt 153  Q
    |||||||||||| ||||| ||||||||||| ||||| |||||||||| ||||||    
T  36754475 tttttgtcaagtagcctaatggttagaactcacacatattaaatgtgtagaagt 36754422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 40375257 - 40375322
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccggg 165  Q
    |||||||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| |||||    
T  40375257 tttttgtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtagagtgtccggg 40375322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 33133873 - 33133925
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||| ||||||| | ||||||| ||||||| |||||||||||| |||||||||    
T  33133873 ttttagtcaagtagtctagtggctagaactcacacaattaaatatgaagaagt 33133925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 47469029 - 47469089
Alignment:
Q  114 gcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaacc 174  Q
    |||||||||||||| || ||||||||||||||| |||||| | ||| ||||| ||| ||||    
T  47469029 gcctagtggttagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacc 47469089  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 50119099 - 50119047
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| ||| ||||| |||| || ||||||||||||||| ||||||    
T  50119099 tttttgtcaagtagcccagtggctagagctcacacaattaaatgtggagaagt 50119047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 6105 - 6046
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 159  Q
    |||||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||    
T  6105 tttttgtcaagtagcctagtggttagagctcacacaattaaattgtgaagaagtggagtg 6046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 39023303 - 39023244
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 159  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||| |||||| |||||    
T  39023303 tttttgtcaagtagcctagtggctagaacttacacaattaaattgtggagaagtggagtg 39023244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 55238441 - 55238516
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||| || |||| |||||  || |||||||||||    
T  55238441 tttttgtcaagtagcctagtggctagaacttacacaattaaattgtaaaaaagtggagtgttcgagattcaaaccc 55238516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 56479170 - 56479244
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||| ||||||| | ||| ||||| ||| |||||    
T  56479170 tttttgtcaagtagcctagtggttagaactcagacaactaaatgtaaagaagtggggtgtccggggttcgaaccc 56479244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 29406484 - 29406432
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||| ||||||||||||||| || || ||||||||||||||| ||||||    
T  29406484 tttttgtctagttgcctagtggttggagctcacacaattaaatgtggagaagt 29406432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 626924 - 626999
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| ||||| ||| |||||    
T  626924 tttttgtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccc 626999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 45849175 - 45849116
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 159  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||| |||||    
T  45849175 tttttgtcaagtagcctagtggctagaactcacacaattaaattgtggagaagtggagtg 45849116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 9735073 - 9735111
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaatt 139  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  9735073 tttttgtcaagtagcctagtggttagagcttacacaatt 9735111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 40486568 - 40486494
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||| ||| ||| ||||||||| |||| || ||||| |||||||||||||||| ||||| ||||| ||| |||||    
T  40486568 ttttggtctagtagcctagtggctagagctcacacatttaaatgtgaagaagtggagtgtccggggttcgaaccc 40486494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 55056043 - 55055970
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaacc 174  Q
    |||||||||||| || |||||||| || || ||||||||||||||| |||||| | ||| ||||| ||| ||||    
T  55056043 tttttgtcaagtagcgtagtggttggagctcacacaattaaatgtggagaagtggcgtgtccggggttcgaacc 55055970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 5497226 - 5497278
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    ||||||||||||  | ||||||||||| || ||||||||||||||||| ||||    
T  5497226 tttttgtcaagtaacttagtggttagagctcacacaattaaatgtgaaaaagt 5497278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 17872214 - 17872162
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| ||||||||| |||||||  ||||||||||| || ||||||    
T  17872214 tttttgtcaagtagcctagtggctagaactcgcacaattaaatatggagaagt 17872162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 26919410 - 26919474
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgg 164  Q
    |||||||||||| ||||||||| |||| || |||||| |||| ||||||||||| ||||| ||||    
T  26919410 tttttgtcaagtagcctagtggctagagctcacacaatttaattgtgaagaagtggagtgtccgg 26919474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 45312199 - 45312251
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| ||||| ||| |||| || |||||||||||| |||||||||    
T  45312199 tttttgtcaagtagcctattggctagagctcacacaattaaatatgaagaagt 45312251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 27913412 - 27913471
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 159  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||| |||||| |||||    
T  27913412 tttttgtcaagtagcctagtggttagagcttacacaattaaattgtggagaagtggagtg 27913471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 2289738 - 2289696
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaat 143  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  2289738 tttttgtcaagtagcctagtggttagaactcacacaattaaat 2289696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 13773528 - 13773453
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| ||||| ||| |||||    
T  13773528 tttttgtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccc 13773453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 3286999 - 3287073
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| | ||||||| |||| || ||||||||||||||| |||||| ||||  ||||| ||| |||||    
T  3286999 tttttgtcaagtagtctagtggctagagctcacacaattaaatgtggagaagtggagtatccggggttcgaaccc 3287073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 7907491 - 7907527
Alignment:
Q  107 tcaagttgcctagtggttagaacttacacaattaaat 143  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  7907491 tcaagtagcctagtggttagaactcacacaattaaat 7907527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 27444386 - 27444334
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| | |||||| ||||| || ||||| ||||||||||||||||    
T  27444386 tttttgtcaagtagtctagtgattagagctcacacatttaaatgtgaagaagt 27444334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 28819600 - 28819548
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||| ||| |||||||||||  | |||||||||||||||||| ||||||    
T  28819600 tttttgtctagtagcctagtggttgtagcttacacaattaaatgtggagaagt 28819548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 40688581 - 40688657
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccct 176  Q
    ||||| |||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| ||||| ||| ||||||    
T  40688581 tttttttcaagtagcctagtggttagagctcacacaatttaattgtggagaagtagagtgtccggggttcgaaccct 40688657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 41185403 - 41185455
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    ||||||| |||||| |||||||||||| || | ||||||||||||| ||||||    
T  41185403 tttttgttaagttgtctagtggttagagctcatacaattaaatgtgcagaagt 41185455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 43214481 - 43214429
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||| ||| |||||||||||||| || ||||||||||| ||| ||||||    
T  43214481 tttttgtctagtagcctagtggttagagctcacacaattaaacgtggagaagt 43214429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 11710412 - 11710370
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaat 143  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  11710412 tttttgtcaagtagcctagtggttagaactcacacaattaaat 11710370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 18412683 - 18412633
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaa 151  Q
    |||| ||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  18412683 ttttggtctagttgcctagtggttagaactcacataattaaatgtgaagaa 18412633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 23178833 - 23178908
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||| ||||||| ||||||||| |||| || ||||||||||| ||||||||||| ||||| ||||| ||| |||||    
T  23178833 ttttggtcaagtagcctagtggctagagctcacacaattaaattgtgaagaagtggagtgtccggggttcgaaccc 23178908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 43085165 - 43085240
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||| ||||||| |||||||||||||| ||||||||| |||| |||| |||||| ||||| ||||| ||| |||||    
T  43085165 ttttggtcaagtagcctagtggttagagcttacacaatttaattgtggagaagtggagtgtccggggttcgaaccc 43085240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 22274554 - 22274628
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| ||||||||| |||| || |||||||||| |||| |||||| | ||| ||||| ||| |||||    
T  22274554 tttttgtcaagtagcctagtggctagagctcacacaattaattgtggagaagtggggtgtccggggttcgaaccc 22274628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 24458444 - 24458370
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||| ||||||| | ||||||| |||| || ||||||||||||||| |||||||||||  ||||| ||| |||||    
T  24458444 ttttggtcaagtagtctagtggctagagctcacacaattaaatgtggagaagttgagtatccggggttcgaaccc 24458370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 94453 - 94518
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccggg 165  Q
    |||||||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| |||||    
T  94453 tttttgtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggagtgtccggg 94518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 6511458 - 6511511
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagt 153  Q
    ||||||||||||||  ||||||||||| || ||||||||||| |||||||||||    
T  6511458 tttttgtcaagttgtttagtggttagagctcacacaattaaattgtgaagaagt 6511511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 39169613 - 39169532
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccctagcaa 181  Q
    |||| ||||||| ||||||||| |||| || ||||||||||| |||| |||||||||||| | ||| ||| ||||| |||||    
T  39169613 ttttggtcaagtagcctagtggctagagctcacacaattaaattgtggagaagttgagtgtctggggttcgaaccccagcaa 39169532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 7381810 - 7381909
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaat-taaatgtgaagaagttgagtgaccgggattcaaaccctagcaactgaactaagcttatggg 199  Q
    |||||||||||| | || |||| ||||||| ||||||| ||| |||| |||||| ||||| ||||||||| |||     ||||| ||||||||| |||||    
T  7381810 tttttgtcaagtagtctggtggctagaactcacacaatataattgtggagaagtggagtgtccgggattcgaac-----caactaaactaagctcatggg 7381904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 8265396 - 8265320
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccct 176  Q
    |||| ||||||| ||||||||| |||| || ||||||||||| |||| |||||| ||||| ||||| ||| ||||||    
T  8265396 ttttggtcaagtagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtccggggttcgaaccct 8265320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 15856453 - 15856501
Alignment:
Q  105 tgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||| ||| |||||||||||||| || ||||||||||||||| ||||||    
T  15856453 tgtctagtagcctagtggttagagctcacacaattaaatgtggagaagt 15856501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 43847062 - 43847010
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||| ||| ||||||||| |||| || ||||||||||||||| ||||||    
T  43847062 tttttgtctagtagcctagtggctagagctcacacaattaaatgtggagaagt 43847010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 47194367 - 47194419
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| ||||||||| ||||||| |||||||||| |||| ||||||    
T  47194367 tttttgtcaagtagcctagtggctagaactcacacaattaattgtggagaagt 47194419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 4232286 - 4232344
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtg 159  Q
    |||||||||||| | ||||||  ||||||| ||||||||||| |||||||||| |||||    
T  4232286 tttttgtcaagtagtctagtgactagaactcacacaattaaacgtgaagaagtggagtg 4232344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 25833683 - 25833641
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaat 143  Q
    |||||||||||| ||||||||| |||| |||||||||||||||    
T  25833683 tttttgtcaagtagcctagtggctagagcttacacaattaaat 25833641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 27424966 - 27424909
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagt 158  Q
    |||| ||||||| ||||||||| |||| || ||||||||||||||| |||||| ||||    
T  27424966 ttttggtcaagtagcctagtggctagagctcacacaattaaatgtggagaagtggagt 27424909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 7778955 - 7779003
Alignment:
Q  117 tagtggttagaacttacacaattaaatgtgaagaagttgagtgaccggg 165  Q
    |||||| ||||||| ||||||||||||||| |||||| ||||| |||||    
T  7778955 tagtggctagaactcacacaattaaatgtggagaagtggagtgtccggg 7779003  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 12935867 - 12935815
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||| ||| ||||||||| |||| || ||||||||||||||| ||||||    
T  12935867 tttttgtctagtagcctagtggctagagctcacacaattaaatgtggagaagt 12935815  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 21067013 - 21066961
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| ||||||||| |||| ||  |||||||||||||| ||||||    
T  21067013 tttttgtcaagtagcctagtggctagagctcgcacaattaaatgtggagaagt 21066961  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 17534974 - 17534922
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||||| ||||||    
T  17534974 tttttgtctagtagcctagtggctagaactcacacaattaaatgtggagaagt 17534922  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 30248 - 30307
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 159  Q
    |||| ||||||| ||||||||| ||||||| ||||||||||| ||||||||||| |||||    
T  30248 ttttggtcaagtagcctagtggctagaactcacacaattaaattgtgaagaagtggagtg 30307  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 29284394 - 29284356
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaatt 139  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  29284394 tttttgtcaagtagcctagtggctagaacttacacaatt 29284356  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 2007025 - 2007100
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||||||| ||||||||| |||| || |||||| |||| |||| |||||| ||||| ||||| |||||||||    
T  2007025 tttttgtcaagtagcctagtggatagagctcacacaatttaattgtggagaagtggagtgtccggggttcaaaccc 2007100  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 53752642 - 53752701
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 159  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||| |||||    
T  53752642 tttttgtcaagtagcctagtggctagaactcacacaattaaattgtggagaagtggagtg 53752701  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 44764847 - 44764773
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||||||| | | ||||||||| |||| || ||||||||||||||| |||||| ||||| ||||| ||| |||||    
T  44764847 tttttgtctaatagcctagtggctagagctcacacaattaaatgtggagaagtggagtgtccggggttcgaaccc 44764773  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 882516 - 882475
Alignment:
Q  102 ttttgtcaagttgcctagtggttagaacttacacaattaaat 143  Q
    |||||| |||| ||||||||||||||||| ||||||||||||    
T  882516 ttttgttaagtagcctagtggttagaactcacacaattaaat 882475  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 40192260 - 40192215
Alignment:
Q  124 tagaacttacacaattaaatgtgaagaagttgagtgaccgggattc 169  Q
    ||||||| ||||||||||||||| |||||| ||||| |||||||||    
T  40192260 tagaactcacacaattaaatgtggagaagtggagtgtccgggattc 40192215  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 42268912 - 42268839
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaat-gtgaagaagttgagtgaccgggattcaaac 173  Q
    ||||| |||||| |||||||||||||| ||   |||||||||| ||| |||||| ||||| |||||||||||||    
T  42268912 tttttttcaagtagcctagtggttagagctcgtacaattaaattgtggagaagtggagtgtccgggattcaaac 42268839  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 44685111 - 44685163
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 153  Q
    |||||||||||| | ||||||| ||||||| |||||||||| |||| ||||||    
T  44685111 tttttgtcaagtagtctagtggctagaactcacacaattaattgtggagaagt 44685163  T

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Target: scaffold0246 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 24507 - 24433
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 175  Q
    |||| ||| ||| ||||||||| |||| || ||||| |||||||||||||||| ||||| ||||| ||| |||||    
T  24507 ttttggtctagtagcctagtggctagagctcacacatttaaatgtgaagaagtggagtgtccggggttcgaaccc 24433  T

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Target: scaffold0690 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 3794 - 3718
Alignment:
Q  101 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccct 176  Q
    |||||||||||| ||||||||| |||| || |||||| |||| |||| |||||| ||||| ||||| ||| ||||||    
T  3794 tttttgtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccct 3718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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