View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0185_low_26 (Length: 212)

Name: NF0185_low_26
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0185_low_26
NF0185_low_26
[»] chr7 (6 HSPs)
chr7 (1-123)||(46993334-46993456)
chr7 (1-121)||(39695168-39695288)
chr7 (2-123)||(7352348-7352468)
chr7 (8-123)||(7995038-7995153)
chr7 (22-103)||(11727326-11727407)
chr7 (18-123)||(46265281-46265386)
[»] chr1 (7 HSPs)
chr1 (1-123)||(25785837-25785959)
chr1 (22-123)||(1161411-1161512)
chr1 (1-123)||(16584842-16584964)
chr1 (2-123)||(8084074-8084195)
chr1 (1-120)||(18461195-18461314)
chr1 (23-123)||(11620026-11620126)
chr1 (1-75)||(42009995-42010069)
[»] scaffold0879 (1 HSPs)
scaffold0879 (1-123)||(558-680)
[»] scaffold0565 (1 HSPs)
scaffold0565 (1-123)||(1822-1944)
[»] chr8 (7 HSPs)
chr8 (3-121)||(44223307-44223425)
chr8 (1-123)||(17722398-17722520)
chr8 (2-123)||(7956318-7956439)
chr8 (1-123)||(35948913-35949035)
chr8 (22-90)||(9040519-9040587)
chr8 (28-75)||(34760832-34760879)
chr8 (22-111)||(3767646-3767735)
[»] chr4 (4 HSPs)
chr4 (1-123)||(24466293-24466415)
chr4 (1-124)||(4413540-4413663)
chr4 (2-123)||(23107885-23108010)
chr4 (1-123)||(28319268-28319390)
[»] chr3 (2 HSPs)
chr3 (1-123)||(46655601-46655723)
chr3 (22-111)||(11503316-11503405)
[»] chr5 (4 HSPs)
chr5 (1-123)||(16746399-16746521)
chr5 (3-123)||(19947796-19947916)
chr5 (1-91)||(16746550-16746640)
chr5 (1-87)||(31895982-31896068)
[»] chr2 (5 HSPs)
chr2 (1-111)||(4638240-4638350)
chr2 (34-123)||(36009278-36009367)
chr2 (1-120)||(13852250-13852369)
chr2 (1-123)||(31111499-31111621)
chr2 (22-111)||(38607073-38607162)
[»] scaffold0070 (1 HSPs)
scaffold0070 (8-88)||(13839-13919)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 46993334 - 46993456
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  46993334 cggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgattaaccaatccgatga 46993433  T
Q  101 taaccacactctttattttacta 123  Q
    ||||||||||| |||||||||||    
T  46993434 taaccacactccttattttacta 46993456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 39695168 - 39695288
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||    
T  39695168 cggtttgaaaccgatctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatga 39695267  T
Q  101 taaccacactctttattttac 121  Q
    ||||| ||||| |||||||||    
T  39695268 taacctcactccttattttac 39695288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 7352468 - 7352348
Alignment:
Q  2 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 101  Q
    ||||||||| ||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  7352468 ggtttgaaaccgatccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T
Q  102 aaccacactctttattttacta 123  Q
    |||||||||| |||||||||||    
T  7352369 aaccacactccttattttacta 7352348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 7995038 - 7995153
Alignment:
Q  8 aaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccac 107  Q
    ||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||    
T  7995038 aaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaaccgatgaaccaatccgataataaccac 7995137  T
Q  108 actctttattttacta 123  Q
    |||| |||||||||||    
T  7995138 actccttattttacta 7995153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 11727407 - 11727326
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataa 103  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  11727407 caatcaaaaccgatctagtttggtttggttcgtggtttttcatttcgagatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 46265386 - 46265281
Alignment:
Q  18 gaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttatt 117  Q
    ||||||||| |||| ||||| |||||||||||||    |||| |||||| |||||||  ||||||||||||||||  ||||| ||||  ||||| | |||    
T  46265386 gaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcattttgagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcatt 46265287  T
Q  118 ttacta 123  Q
    ||||||    
T  46265286 ttacta 46265281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 25785837 - 25785959
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25785837 cggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatga 25785936  T
Q  101 taaccacactctttattttacta 123  Q
    |||||||| ||||||||||||||    
T  25785937 taaccacattctttattttacta 25785959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 1161512 - 1161411
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 121  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1161512 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttac 1161413  T
Q  122 ta 123  Q
    ||    
T  1161412 ta 1161411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16584964 - 16584842
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||    
T  16584964 cggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatga 16584865  T
Q  101 taaccacactctttattttacta 123  Q
    |||||| |||| |||||||||||    
T  16584864 taaccaaactccttattttacta 16584842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 8084074 - 8084195
Alignment:
Q  2 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 101  Q
    ||||||||| | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  8084074 ggtttgaaaccaatccgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgat 8084173  T
Q  102 aaccacactctttattttacta 123  Q
    |||||||||| |||||||||||    
T  8084174 aaccacactccttattttacta 8084195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 18461195 - 18461314
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||| ||||||||||| | ||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  18461195 cggtttcaaatcgatctggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatga 18461294  T
Q  101 taaccacactctttatttta 120  Q
    ||||||||||| ||| ||||    
T  18461295 taaccacactcattaattta 18461314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 11620026 - 11620126
Alignment:
Q  23 aatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttact 122  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||  ||||||  ||||||||||    
T  11620026 aatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatgaaccaatccgatgatactcacactacttattttact 11620125  T
Q  123 a 123  Q
    |    
T  11620126 a 11620126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42010069 - 42009995
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 75  Q
    |||||||||| |||||  || |||| ||||| |||||||||| |||||  |||||||||||||||| ||||||||    
T  42010069 cggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatccg 42009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 680 - 558
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  680 cggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatga 581  T
Q  101 taaccacactctttattttacta 123  Q
    ||||||||||| |||||||||||    
T  580 taaccacactccttattttacta 558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1944 - 1822
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  1944 cggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaaccaatccgatga 1845  T
Q  101 taaccacactctttattttacta 123  Q
    |||| |||||| |||||||||||    
T  1844 taacaacactccttattttacta 1822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 44223425 - 44223307
Alignment:
Q  3 gtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgata 102  Q
    |||| ||| ||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  44223425 gtttaaaaccgatctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgata 44223326  T
Q  103 accacactctttattttac 121  Q
    ||||||||| |||||||||    
T  44223325 accacactccttattttac 44223307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 17722520 - 17722398
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| | ||| |||  ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  17722520 cggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatga 17722421  T
Q  101 taaccacactctttattttacta 123  Q
    ||||||||||| ||| |||||||    
T  17722420 taaccacactcattactttacta 17722398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 7956439 - 7956318
Alignment:
Q  2 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 101  Q
    ||||||||| ||||  ||| |||||||||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||    
T  7956439 ggtttgaaaccgattcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgat 7956340  T
Q  102 aaccacactctttattttacta 123  Q
    ||||| |||| |||||||||||    
T  7956339 aaccatactccttattttacta 7956318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 35948913 - 35949035
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| |||||| || |||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  35948913 cggtttgaaaccgatccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatga 35949012  T
Q  101 taaccacactctttattttacta 123  Q
    |||| ||| || |||||||||||    
T  35949013 taacaacattccttattttacta 35949035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 9040519 - 9040587
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 90  Q
    ||||| |||| ||||| ||||||||||||||  |||||||||||| ||||||   ||||||||||||||    
T  9040519 caatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 34760879 - 34760832
Alignment:
Q  28 aaactgatctagtttggtttggttcatggtttttcatttcgagatccg 75  Q
    |||| |||||||||||||||||||| |||||||| |||| ||||||||    
T  34760879 aaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 3767735 - 3767646
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 111  Q
    ||||| |||| ||||||||||||||||||||  ||||||| |||| |||||||    |||||||||||| | || ||| ||||| |||||    
T  3767735 caatctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactc 3767646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 24466415 - 24466293
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  24466415 cggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatga 24466316  T
Q  101 taaccacactctttattttacta 123  Q
    ||||||||||| |||||||||||    
T  24466315 taaccacactccttattttacta 24466293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 4413540 - 4413663
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||| ||| ||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4413540 cggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatga 4413639  T
Q  101 taaccacactctttattttactag 124  Q
    ||| ||||||| ||||||||||||    
T  4413640 taatcacactccttattttactag 4413663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 23108010 - 23107885
Alignment:
Q  2 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc----aatccaa 97  Q
    ||||||||| ||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||| |    
T  23108010 ggtttgaaaccgatccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcaatccga 23107911  T
Q  98 tgataaccacactctttattttacta 123  Q
    ||||||||| |||| |||||||||||    
T  23107910 tgataaccatactccttattttacta 23107885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 28319390 - 28319268
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| || || ||| ||||| |||  ||| || ||||||||||||||||||||||||||||||||| |||||| | |||||| |||||  ||||    
T  28319390 cggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatga 28319291  T
Q  101 taaccacactctttattttacta 123  Q
    ||||||||||| |||||||||||    
T  28319290 taaccacactccttattttacta 28319268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 46655601 - 46655723
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| ||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46655601 cggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 46655700  T
Q  101 taaccacactctttattttacta 123  Q
    ||||||||||  |||||||||||    
T  46655701 taaccacacttcttattttacta 46655723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 11503405 - 11503316
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 111  Q
    |||||||||| |||||  |||||||||||||  | |||||||||| |||||||  ||||||||| |||| | || ||| ||||| |||||    
T  11503405 caatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactc 11503316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16746521 - 16746399
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  16746521 cggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaaccaatccgatga 16746422  T
Q  101 taaccacactctttattttacta 123  Q
    ||||| ||||| |||||||||||    
T  16746421 taacctcactccttattttacta 16746399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 19947796 - 19947916
Alignment:
Q  3 gtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgata 102  Q
    |||||||| |||||  || |||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  19947796 gtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgata 19947895  T
Q  103 accacactctttattttacta 123  Q
    ||||||||| |||||||||||    
T  19947896 accacactccttattttacta 19947916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 16746640 - 16746550
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacca 91  Q
    |||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  16746640 cggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31895982 - 31896068
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatga 87  Q
    |||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  31895982 cggtttgaaaccgatctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4638240 - 4638350
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||||||||| ||| ||||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  4638240 cggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatga 4638339  T
Q  101 taaccacactc 111  Q
    |||||||||||    
T  4638340 taaccacactc 4638350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 36009278 - 36009367
Alignment:
Q  34 atctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttacta 123  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttacta 36009367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 13852369 - 13852250
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| |||||  || ||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||   |||    
T  13852369 cggtttgaaaccgatccaaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttga 13852270  T
Q  101 taaccacactctttatttta 120  Q
    ||||||||||| ||||||||    
T  13852269 taaccacactccttatttta 13852250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 31111499 - 31111621
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    ||||||||||  |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||   |||    
T  31111499 cggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatctggtga 31111598  T
Q  101 taaccacactctttattttacta 123  Q
    ||||||||||  |||||||||||    
T  31111599 taaccacacttcttattttacta 31111621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 38607073 - 38607162
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 111  Q
    ||||| ||||||| || |||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||   ||| |||||||||||    
T  38607073 caatctaaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactc 38607162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 13839 - 13919
Alignment:
Q  8 aaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaa 88  Q
    ||||||| | ||| ||||| ||||||||||  ||||||||||||   |||||||||||| |||||||   |||||||||||    
T  13839 aaatcgaaccgaaccaatctaaactgatcttatttggtttggttatcggtttttcattttgagatccaataaaccgatgaa 13919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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