View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0185_low_27 (Length: 211)
Name: NF0185_low_27
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0185_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 31241466 - 31241342
Alignment:
| Q |
1 |
tatattaaccatctactactcaagattcacatttgtagtattactctgtagattattatatatatgctagatgttggtcctctaattcattttaattggt |
100 |
Q |
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| T |
31241466 |
tatattaaccatctactactaaagattcacatttgtagtattactatgtagattattatatatatgctagatgttggtcctctaattcattttaattggt |
31241367 |
T |
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| Q |
101 |
gccataccatttcaaaattggcaga |
125 |
Q |
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||||||||||||||||||||||||| |
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| T |
31241366 |
gccataccatttcaaaattggcaga |
31241342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 31232497 - 31232383
Alignment:
| Q |
2 |
atattaaccatctactactcaagattcacatttgtagtattactct--gtagattattata-tatatgctagatgttggtcctctaattcattttaattg |
98 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| | | | | |||| | |||||||||||| || ||| |||||||||||||||||| |
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| T |
31232497 |
atattaaccatctactactcaagactcacatttgtagtattactttaatttgttgattacactatatgctagatattagtcttctaattcattttaattg |
31232398 |
T |
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| Q |
99 |
gtgccataccatttc |
113 |
Q |
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||| |||||||||| |
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| T |
31232397 |
gtgttataccatttc |
31232383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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