View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0185_low_3 (Length: 397)
Name: NF0185_low_3
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0185_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 132 - 385
Target Start/End: Complemental strand, 33699371 - 33699118
Alignment:
| Q |
132 |
atggcctaatagatccttctcattcaatctctgctcctttctcttgcaaattatctcacttataatctcttgaattcgccgcctcgcctaatataattag |
231 |
Q |
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| T |
33699371 |
atggcctaatagatccttctcattcaatctttgctcctttctcttgcaaattatctcacttataatctcttgaattcgccgcctcgcctaatttaattag |
33699272 |
T |
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| Q |
232 |
acaatttaaccaatttttagtcaagttatattattctagaacttttatactgcgaccgcaattgcagttagtgatcgaaatttagaactactaaaatcat |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699271 |
acaatttaaccaatttttagtcaagttatattattctaaaacttttatactgcgaccgcaattgcagttagtgatcgaaatttagaactactaaaatcat |
33699172 |
T |
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| Q |
332 |
atataaaccaaaagttgcagtgcagtggagcttaccaaaagagctttggagtat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699171 |
atataaaccaaaagttgcagtgcagtggagcttaccaaaagagctttggagtat |
33699118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 33658682 - 33658597
Alignment:
| Q |
135 |
gcctaatagatccttctcattcaatctctgctcctttctcttgcaaattatctcacttataatctcttgaattcgccgcctcgcct |
220 |
Q |
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||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||| | ||||||||| |
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| T |
33658682 |
gcctaatagattcttctcaatcaatctctgctcctttttcttgcaaattatttcacttataatctcccgaattctctgcctcgcct |
33658597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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