View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0185_low_6 (Length: 349)

Name: NF0185_low_6
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0185_low_6
NF0185_low_6
[»] chr4 (1 HSPs)
chr4 (96-278)||(42402893-42403074)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 96 - 278
Target Start/End: Original strand, 42402893 - 42403074
Alignment:
Q  96 catcatcataatagtcctctccacactccnnnnnnnntaggacattcaaagaacaaatgtctcgccgattctaccacttggcaacctccaatgcacctaa 195  Q
    ||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42402893 catcaccataatagtcctctccacactccaaaaaaa-taggacattcaaagaacaaatgtctcgccgattctaccacttggcaaccaccaatgcacctaa 42402991  T
Q  196 ccatgtcaccgcctataatacctcttttcaataggttatcccttgaactagctctaaaatgtgtatactttgcctacaatttt 278  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42402992 ccgtgtcaccgcctataacacctcttttcaataggttatcccttgaactagctctaaaatgtgtatactttgcctacaatttt 42403074  T

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